all_snakes_dataset1_informative_sites.inf.taxon

Tab delimited text files with information for resulting UCE loci for both the 50% missing data matrix and the 35% missing data matrix (i.e., 65% complete)

Final_Specimen&LibraryPrep

Excel file (with two tabs) with details on specimens and library prep information

Extraction_protocol

Extraction protocol followed in the manuscript

Starbeast_random70_4

Alignments (nexus) for *Beast analysis: 70 random loci, set

Phylips&trees

Includes the 50% missing data alignment/resulting tree and the 35% missing data (i.e., 65% complete) alignment/resulting tree

Abyss contigs

The assembled contigs for each sequenced individual from Abyss, including the negative control

Starbeast_informative100

Alignments (nexus) for *Beast analysis: 100 most informative loc

Distribution of mtDNA haplogroups and microsatellite divergence in relation to three Mississippi River oxbow lakes.

<p>Circles refer to sample sites and numbers correspond to localities described in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0062812#pone.0062812.s002" target="_blank">Table S1</a>. Two “pure” sites (11 and 12) were sampled away from the river. For each site, circle fill is proportional to percent membership of samples in two cyt<i>b</i> haplogroups (yellow = western haplogroup, green = eastern haplogroup). Dotted lines between sites indicate <i>D_est</i> values for site pairs calculated from microsatellite data. For the southern oxbow samples, circles around sampling sites indicate multiple locations that were treated as a single site. In the north, two <i>cis</i> sites were collected (<i>cis</i>2 and <i>cis</i>2) and combined for some analyses to increase sample size.</p

Regions and populations sampled.

<p>Map code corresponds to <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0130131#pone.0130131.g001" target="_blank">Fig 1</a>.</p><p>Regions and populations sampled.</p

RAxML-20percent-1k

Concatenated phylip alignment for RAxML: 1k-samples, up to 20 percent missing samples per locu