GMOD/Apollo: Apollo2.1.0(JB#d3827c)

<p><strong>2.1.0 Official Release</strong></p> <p>Some of the new features include:<br> - Added ability to annotate a variant from VCF evidence tracks [1892](https://github.com/GMOD/Apollo/pull/1892)<br> - Allow forced assignment of transcript to a gene [#1851](https://github.com/GMOD/Apollo/pull/1851)<br> - Added proper Instructor and Organism Admin permission level [#1178](https://github.com/GMOD/Apollo/issues/1178)<br> - Indicate start / stop codons with color [#1852](https://github.com/GMOD/Apollo/pull/1852)<br> - Set the default biotype on track [#1861](https://github.com/GMOD/Apollo/issues/1861)</p> <p>Some important bug fixes:<br> - Prevents setting bad translation starts and ends [#1838](https://github.com/GMOD/Apollo/issues/1838)<br> - Fixed descriptor leak when loading bulk loading GFF3 [#1187](https://github.com/GMOD/Apollo/pull/1887)<br> - Fixed adding ability to create sequence alterations of uneven length [#1883](https://github.com/GMOD/Apollo/issues/1883)<br> - Fixed problem where canonical splice-sites were not recognized if sequence was being shown in lower-case [#1879](https://github.com/GMOD/Apollo/issues/1879)<br> - In some cases when the name store is not properly configured, the location is not remembered [#1895](https://github.com/GMOD/Apollo/issues/1895)</p> <p><br> *Note* You will need to [install node 6 or better](https://nodejs.org/en/download/package-manager/).  <br> *Note* If updating your jbrowse settings from previous versions in `apollo-config.groovy` you will need to set the JBrowse to use the [currently tagged version or better](https://github.com/GMOD/Apollo/blob/master/sample-postgres-apollo-config.groovy#L113).   If this is  commented out, however, [the default will work](https://github.com/GMOD/Apollo/blob/master/grails-app/conf/Config.groovy#L388-L433). <br> *Note* Some issues with new tomcat and addStore / addTracks RFC 7230 and RFC 3986.  See http://genomearchitect.readthedocs.io/en/latest/Setup.html?highlight=RFC#json-in-the-url-with-newer-versions-of-tomcat</p> <p>The complete change log can be found at: https://github.com/GMOD/Apollo/blob/master/ChangeLog.md</p> <p>Please review the documentation pages for more details: http://genomearchitect.readthedocs.io/en/stable/</p> <p>Note: You can find a guide upgrading existing Apollo installations here: <br> http://genomearchitect.readthedocs.io/en/stable/Migration.html</p> <p>Please open a GitHub issue if you find any problems: https://github.com/GMOD/Apollo/issues/</p> <p>Active mailing list ([email protected]) and [archive](http://gmod.827538.n3.nabble.com/Apollo-f815553.html).</p

RAD tag (SgrAI) derived SNPs from Bombus impatiens

RAD tag (SgrAI) derived SNPs from Bombus impatiens from Sadd et al. (2015) "The genomes of two key bumblebee species with primitive eusocial organisation