variant pileup for sample 2 reads mapping

Paired end reads from sample 2 genomic sequencing were mapped on Arabis alpina contigs with BWA. Variant pileup was obtanied with samtools from bam file

variant pileup for sample 12 reads mapping

Paired end reads from sample 12 genomic sequencing were mapped on Arabis alpina contigs with BWA. Variant pileup was obtanied with samtools from bam file

variant pileup for sample 13 reads mapping

Paired end reads from sample 13 genomic sequencing were mapped on Arabis alpina contigs with BWA. Variant pileup was obtanied with samtools from bam file

variant pileup for sample 9 reads mapping

Paired end reads from sample 9 genomic sequencing were mapped on Arabis alpina contigs with BWA. Variant pileup was obtanied with samtools from bam file

variant pileup for sample 16 reads mapping

Paired end reads from sample 16 genomic sequencing were mapped on Arabis alpina contigs with BWA. Variant pileup was obtanied with samtools from bam file

variant pileup for sample 4 reads mapping

Paired end reads from sample 4 genomic sequencing were mapped on Arabis alpina contigs with BWA. Variant pileup was obtanied with samtools from bam file

arabis alpina filtered snp table

A summary of the filtered 127041 SNPs.The file provide : the contig name, the position on the contig, the reference base, the variant base, the global coverage, the average coverage, the phred mapping qualit

variant pileup for sample 15 reads mapping

Paired end reads from sample 15 genomic sequencing were mapped on Arabis alpina contigs with BWA. Variant pileup was obtanied with samtools from bam file

variant pileup for sample 8 reads mapping

Paired end reads from sample 8 genomic sequencing were mapped on Arabis alpina contigs with BWA. Variant pileup was obtanied with samtools from bam file

variant pileup for sample 10 reads mapping

Paired end reads from sample 10 genomic sequencing were mapped on Arabis alpina contigs with BWA. Variant pileup was obtanied with samtools from bam file