Variational Inference for Stochastic Block Models from Sampled Data

This paper deals with non-observed dyads during the sampling of a network and consecutive issues in the inference of the Stochastic Block Model (SBM). We review sampling designs and recover Missing At Random (MAR) and Not Missing At Random (NMAR) conditions for the SBM. We introduce variants of the variational EM algorithm for inferring the SBM under various sampling designs (MAR and NMAR) all available as an R package. Model selection criteria based on Integrated Classification Likelihood are derived for selecting both the number of blocks and the sampling design. We investigate the accuracy and the range of applicability of these algorithms with simulations. We explore two real-world networks from ethnology (seed circulation network) and biology (protein-protein interaction network), where the interpretations considerably depends on the sampling designs considered

A model for gene deregulation detection using expression data

In tumoral cells, gene regulation mechanisms are severely altered, and these modifications in the regulations may be characteristic of different subtypes of cancer. However, these alterations do not necessarily induce differential expressions between the subtypes. To answer this question, we propose a statistical methodology to identify the misregulated genes given a reference network and gene expression data. Our model is based on a regulatory process in which all genes are allowed to be deregulated. We derive an EM algorithm where the hidden variables correspond to the status (under/over/normally expressed) of the genes and where the E-step is solved thanks to a message passing algorithm. Our procedure provides posterior probabilities of deregulation in a given sample for each gene. We assess the performance of our method by numerical experiments on simulations and on a bladder cancer data set

Geochemical Assessment of the Injection of CO2 into Rousse Depleted Gas Reservoir. Part I: Initial Mineralogical and Geochemical Conditions in the Mano Reservoir

AbstractGeochemical modeling of the CO2 injection into the Rousse depleted gas reservoir (Lacq CO2 injection pilot, France) requires an accurate knowledge of initial mineralogical and geochemical conditions in the formation.Therefore, the primary objective of this work was to provide a detailed mineralogical and chemical composition of the Rousse reservoir (Mano dolomite), and accurate relative mineral proportions. This was achieved by use of a combination of techniques including in-house developed methodology for bulk rock quantitative mineralogy and complementary approaches such as optical microscopy, SEM-Quantax (chemical mapping) and Electron Miroprobe Analysis (mineral chemical composition).Particular attention was paid the minute amounts of chlorite occurring in the reservoir, in order to obtain its exact chemical composition and textural habitus. The chlorite revealed to be Mg-rich and of a sudoite-like nature. As a consequence the initial geochemical model, which assumed the chlorite to be Fe-rich was corrected, so as to ensure more accurate reactive geochemical modeling.A refined quantitative mineralogy and chemical composition of the Rousse reservoir (Mano dolomite), fulfilling thermodynamic equilibrium at initial conditions (150°C, 480bar), is provided

Ex-situ mineral carbonation: resources, process and environmental assessment (Carmex project)

This article presents the main results of the Carmex project (2009-2012), whose purpose was to review the feasibility of ex-situ mineral carbonation in terms of resource availability, performance of the aqueous mineral carbonation process and life cycle analysis criteria. This collaborative project looked at a wide range of generic issues about this CO2 mitigation option, with particular views on assessing its potential in the context of New-Caledonia. Indeed, insularity and local abundance of 'carbonatable' rocks and industrial wastes (i.e. rich in MgO, CaO, if not Fe(II)O), coupled with significant GHG emissions from first-class nickel pyrometallurgical industries, make it a potential candidate for application of ex-situ mineral carbonation. The project conducted a worldwide analysis of the potential of ex-situ mineral carbonation using a dedicated SIG-based tool. Using a variety of materials the project also reviewed a number of critical issues associated with the aqueous mineral carbonatation process itself, with promising perspectives. Finally, through life cycle analysis of the system as a whole, ex-situ mineral carbonation was compared to mainstream CSC solutions. It was concluded that the viability of this CO2 storage option is located at the level of the process itself and lies with the optimisation of its operating conditions

Monitoring of the heart movements using a FMCW radar and correlation with an ECG

Monitoring the heart activity is an important task to prevent and diagnose cardiovascular diseases. An electrocardio-gram (ECG) is the gold standard for such task. It monitors the heart electrical activity, and while the later is highly correlated to the cardiac mechanical activity, it does not provide all the information. Other sensors such as echo-cardiograph allow to monitor the heart movements, but such tools are hard to operate and expensive. Therefore, contact-less monitoring of the heart using RF sensing has gained interest over the past years. In this paper, we provide a process to extract the movement of the heart with a high accuracy from a millimeter wave radar, i.e. we describe a non invasive and affordable way to monitor cardiac movements. We then demonstrate the correlation between the observed movements and the ECG. Furthermore, we propose an algorithm to synchronize the ECG signal and the processed signal from the radar sensor. The results we obtained provide insights on the mechanical activity of the heart, which could assist cardiologists in their diagnosisComment: 10 pages, 19 figure

About the foundations of direct aqueous carbonation with dissolution enhancing organic salts

Direct aqueous carbonation is a promising mineral carbonation route. Under mildly acidic conditions, this single-step carbonation process aims to simultaneously dissolve Ca/Mg-bearing silicates or wastes and precipitate Ca/Mg carbonates. By and large, since mineral dissolution is rate limiting due to the lack of protons at near-neutral pH, research has mainly been concerned with the issue of enhancing dissolution. By analysing the liquid phase, it has been established that polyacid organic salts can significantly enhance silicate dissolution under such unfavourable conditions. Comparatively little attention has been paid to the investigation of the very basis of the whole process, i.e. the concomitance of silicate dissolution and carbonate precipitation. By taking a close look at the solid phases in lizardite and olivine slurries, this work confirms the co-occurrence of magnesium silicate dissolution and magnesite precipitation inside a stirred reactor operating at 120°C, 20 bar of CO2 and 0.1M disodium oxalate, thereby bringing indisputable evidence that supports the foundation of direct aqueous carbonation with organic salts

Concordance between SIVA, IVAN, and VAMPIRE software tools for semi-automated analysis of retinal vessel caliber

We aimed to compare measurements from three of the most widely used software packages in the literature and to generate conversion algorithms for measurement of the central retinal artery equivalent (CRAE) and central retinal vein equivalent (CRVE) between SIVA and IVAN and between SIVA and VAMPIRE. We analyzed 223 retinal photographs from 133 human participants using both SIVA, VAMPIRE and IVAN independently for computing CRAE and CRVE. Agreement between measurements was assessed using Bland–Altman plots and intra-class correlation coefficients. A conversion algorithm between measurements was carried out using linear regression, and validated using bootstrapping and root-mean-square error. The agreement between VAMPIRE and IVAN was poor to moderate: The mean difference was 20.2 µm (95% limits of agreement, LOA, −12.2–52.6 µm) for CRAE and 21.0 µm (95% LOA, −17.5–59.5 µm) for CRVE. The agreement between VAMPIRE and SIVA was also poor to moderate: the mean difference was 36.6 µm (95% LOA, −12.8–60.4 µm) for CRAE, and 40.3 µm (95% LOA, 5.6–75.0 µm) for CRVE. The agreement between IVAN and SIVA was good to excellent: the mean difference was 16.4 µm (95% LOA, −4.25–37.0 µm) for CRAE, and 19.3 µm (95% LOA, 0.09–38.6 µm) for CRVE. We propose an algorithm converting IVAN and VAMPIRE measurements into SIVA-estimated measurements, which could be used to homogenize sets of vessel measurements obtained with different software packages

Comprehensive analysis of direct aqueous mineral carbonation using dissolution enhancing organic additives.

Direct aqueous mineral carbonation using organic anions has been presented by many as a promising strategy for mineral carbonation, on the basis that additives such as oxalate increase the rate and extent of dissolution of magnesium silicates several folds. Through geochemical modelling and detailed solid characterization, this paper discusses and extends our current understanding of this process. The role of disodium oxalate as a dissolution enhancing agent for olivine is thoroughly examined through experiments in which all phases are carefully analysed. We show that under 20 bar of CO2 pressure formation of strong oxalate-magnesium complexes in solution and precipitation of MgC2O4,2H2O (glushinskite) impede any chance of obtaining significant amounts of magnesium carbonate. Other promising ligands from a dissolution perspective, namely citrate and EDTA salts, are also investigated. Contrary to oxalate, these ligands do not form any solid by-products with magnesium, and yet they do not produce better carbonation results, thereby casting strong doubts on the possibility of developing a direct aqueous mineral carbonation process using organic salts. Geochemical modelling permits successful simulation of the dissolution kinetics of magnesium silicate using a shrinking particle model that accounts for the precipitation of glushinskite, amorphous silica and a magnesium phyllosilicate at advanced stages of the dissolution process