33 research outputs found

    BacHBerry: BACterial Hosts for production of Bioactive phenolics from bERRY fruits

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    BACterial Hosts for production of Bioactive phenolics from bERRY fruits (BacHBerry) was a 3-year project funded by the Seventh Framework Programme (FP7) of the European Union that ran between November 2013 and October 2016. The overall aim of the project was to establish a sustainable and economically-feasible strategy for the production of novel high-value phenolic compounds isolated from berry fruits using bacterial platforms. The project aimed at covering all stages of the discovery and pre-commercialization process, including berry collection, screening and characterization of their bioactive components, identification and functional characterization of the corresponding biosynthetic pathways, and construction of Gram-positive bacterial cell factories producing phenolic compounds. Further activities included optimization of polyphenol extraction methods from bacterial cultures, scale-up of production by fermentation up to pilot scale, as well as societal and economic analyses of the processes. This review article summarizes some of the key findings obtained throughout the duration of the project

    Gut microbiome structure and evolution in <i>Parnassius</i> species on the Qinghai-Tibet Plateau

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    Based on the aggregated genome-based phylogeny and microbial data of Parnassius species at the population level which were generated with the same collection methods, we utilized a robust analytical framework to resolve the relative importance of host genetics, geography, altitude, and larval host-plant on gut microbial community structure and evolution. Our findings indicate that both host genetics and larval host-plant modulated gut microbial diversity and community structure. Moreover, we decoupled the effects of host genetics and larval diet on gut microbiome and showed that host genetics mainly governed gut microbial beta diversity and community structure, while larval host-plant functionally influenced gut microbiome evolution. Our findings help to resolve the major modulators of gut microbiome diversity and evolution in butterfly species, which have not been well studied in wild insects with varying degrees of ecological niche divergence and evolutionary relatedness, especially those inhabit on the QTP.</p

    The complete mitochondrial genome of Syrphus ribesii (Diptera: Syrphoidea: Syrphidae)

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    The complete mitochondrial genome of Syrphus ribesii was determined in this study. The double-stranded circular DNA molecule was 16,530 bp in length, containing 37 typical genes: 13 protein-coding genes (PCGs), 2 rRNA genes, 22 tRNA genes, and an A + T-rich region. Thirteen PCGs were 11,196 bp in size, encoding 3720 amino acids in total. All the PCGs started with ATN, except the COI used TTG as its initiation codon. Most PCGs terminated with standard codon TAA, while the COI ended with T and the ND5 ended with TA. The lrRNA and srRNA genes were 1341 bp and 793 bp in length, respectively. The A + T-rich region harbored some typical structures characteristic of the dipterans. The phylogenetic tree showed that Syrphus ribesii was closely related to Eupeodes corollae, and the Syrphidae and Pipunculidae constituted a monophyletic group within the Syrphoidea

    Comparative Mitogenomic Analysis of Two Cuckoo Bees (Apoidea: Anthophila: Megachilidae) with Phylogenetic Implications

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    Bees (Hymenoptera, Apoidea and Anthophila) are distributed worldwide and considered the primary pollinators of angiosperm. Megachilidae is one of the largest families of Anthophila. In this study, two complete mitogenomes of cuckoo bees in Megachilidae, namely Coelioxys fenestrata and Euaspis polynesia, were amplified and sequenced, with a length of 17,004 bp (C. fenestrata) and 17,682 bp (E. polynesia). The obtained results show that 37 mitogenomic genes and one putative control region were conserved within Hymenoptera. Truncated stop codon T was found in the cox3 gene of E. polynesia. The secondary structure of small (rrnS) and large (rrnL) rRNA subunits contained three domains (28 helices) and five domains (44 helices) conserved within Hymenoptera, respectively. Compared with ancestral gene order, gene rearrangement events included local inversion and gene shuffling. In order to reveal the phylogenetic position of cuckoo bees, we performed phylogenetic analysis. The results supported that all families of Anthophila were monophyletic, the tribe-level relationship of Megachilidae was Osmiini + (Anthidiini + Megachilini) and Coelioxys fenestrata was clustered to the Megachile genus, which was more closely related to Megachile sculpturalis and Megachile strupigera than Euaspis polynesia

    Direct Sailing Variable Acceleration Dynamics Characteristics of Water-Jet Propulsion with a Screw Mixed-Flow Pump

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    Strong nonlinearity and the relevance of time-varying dynamic parameters in the maneuverable process of water-jet propulsion were major problems encountered in the prediction of variable acceleration dynamics characteristics. The relationships between the thrust and rotation speed of a screw mixed-flow pump, drag and submerged speed of water-jet propulsion were obtained from flume experiments and numerical calculations, based on which a dynamic model of pump-jet propulsion was established in this paper. As an initial condition, the numerical solution of the submerged speed with respect to time was inputted to computational fluid dynamics (CFD) for unsteady calculation based on a user-defined function (UDF). Thus, the relationships between the acceleration, drag, net thrust, propulsion torque and efficiency with respect to time were revealed. The results indicate that the relationship between the thrust and rotational speed of a water-jet propeller is a quadratic function, which agrees well with the experimental values. The variation of submerged speed with respect to time satisfies a hyperbolic tangent function distribution. The acceleration increases sharply at the beginning and then decreases gradually to zero, especially at high rotation speeds of the water-jet pump. The variations in drag and propulsion efficiency with respect to time coincide with the step response of a second-order system with critical damping. The method and results of this study can give a better understanding of the changes in dynamic parameters such as velocity, acceleration, thrust, and drag during the acceleration of a pump-jet submersible and helped to estimate the effects of pump performance on water-jet propulsion kinetic parameters

    Periodically twinned nanotowers and nanodendrites of mercury selenide synthesized via a solution-liquid-solid route

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    Two types of mercury selenide nanostructures, nanotowers and nanoscale dendrites, have been created with good control and high yield by a solution-liquid-solid process. Alternating twinned structures have been achieved in both the nanotowers and the nanodendrites, which originate from self-oscillations of local reaction variables sustained by the competition between the rates of supply and deposition of HgSe in the liquid mercury droplets

    Phylogeny and Biogeographic History of <i>Parnassius</i> Butterflies (Papilionidae: Parnassiinae) Reveal Their Origin and Deep Diversification in West China

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    We studied 239 imagoes of 12 Parnassius species collected from the mountains of the Qinghai–Tibet Plateau (QTP) and its neighbouring areas in China. We selected three mitochondrial gene (COI, ND1, and ND5) sequences, along with the homologous gene sequences of other Parnassius species from GenBank, to reconstruct the phylogenetic tree and biogeographic history of this genus. Our results show that Parnassius comprises eight monophyletic subgenera, with subgenus Parnassius at the basal position; the genus crown group originated during the Middle Miocene (ca. 16.99 Ma), and species diversification continued during sustained cooling phases after the Middle Miocene Climate Optimum (MMCO) when the QTP and its neighbouring regions experienced rapid uplift and extensive orogeny. A phylogenetic network analysis based on transcriptomes from GenBank suggests that ancient gene introgression might have contributed to the spread of the Parnassius genus to different altitudes. Ancestral area reconstruction indicates that Parnassius most likely originated in West China (QTP and Xinjiang) and then spread to America in two dispersal events as subgenera Driopa and Parnassius, along with their host plants Papaveraceae and Crassulaceae, respectively. Our study suggests that extensive mountain-building processes led to habitat fragmentation in the QTP, leading to the early diversification of Parnassius, and climate cooling after MMCO was the driving mechanism for the dispersal of Parnassius butterflies from West China to East Asia, Europe, and North America

    Potential Application of Nitrogen-Doped Carbon Quantum Dots Synthesized by a Solvothermal Method for Detecting Silver Ions in Food Packaging

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    In this paper, nitrogen-doped carbon quantum dots (N-CQDs) were synthesized by a solvothermal method using 1,2,4-triaminobenzene as a carbon precursor. The surface of the synthesized N-CQDs was modified with amino functional groups. The results indicated that N-CQDs had various N-related functional groups and chemical bonds and were amorphous in structure. At the same time, the quantum yield of N-CQDs was 5.11%, and the average lifetime of fluorescence decay was 5.79 ns. The synthesized N-CQDs showed good selectivity for and sensitivity to Ag+. A linear relationship between N-CQDs detection efficiency and Ag+ concentration was observed for concentration ranges of Ag+ corresponding to 0&ndash;10 &mu;M and 10&ndash;30 &mu;M. In addition, N-CQDs were used for the detection of trace Ag+ in food packaging material. The silver ion content of the sample determined by the N-CQDs detection method was 1.442 mg/L, with a relative error of 6.24% with respect to flame atomic absorption spectrometry, according to which the Ag+ content was 1.352 mg/L. This indicates that the N-CQDs detection method is reliable. Therefore, the N-CQDs prepared in this paper can detect Ag+ rapidly, simply, and sensitively and are expected to be a promising tool for the detection of trace Ag+ in food packaging materials
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