Molecular Probe Optimization to Determine Cell Mortality in a Photosynthetic Organism (Microcystis aeruginosa) Using Flow Cytometry

Microbial sub populations in field and laboratory studies have been shown to display high heterogeneity in morphological and physiological parameters. Determining the real time state of a microbial cell goes beyond live or dead categories, as microbes can exist in a dormant state, whereby cell division and metabolic activities are reduced. Given the need for detection and quantification of microbes, flow cytometry (FCM) with molecular probes provides a rapid and accurate method to help determine overall population viability. By using SYTOX Green and SYTOX Orange in the model cyanobacteria Microcystis aeruginosa to detect membrane integrity, we develop a transferable method for rapid indication of single cell mortality. The molecular probes used within this journal will be referred to as green or orange nucleic acid probes respectively (although there are other products with similar excitation and emission wavelengths that have a comparable modes of action, we specifically refer to the fore mentioned probes). Protocols using molecular probes vary between species, differing principally in concentration and incubation times. Following this protocol set out on M.aeruginosa the green nucleic acid probe was optimized at concentrations of 0.5 μM after 30 min of incubation and the orange nucleic acid probe at 1 μM after 10 min. In both probes concentrations less than the stated optimal led to an under reporting of cells with membrane damage. Conversely, 5 μM concentrations and higher in both probes exhibited a type of non-specific staining, whereby 'live' cells produced a target fluorescence, leading to an over representation of 'non-viable' cell numbers. The positive controls (heat killed) provided testable dead biomass, although the appropriateness of control generation remains subject to debate. By demonstrating a logical sequence of steps for optimizing the green and orange nucleic acid probes we demonstrate how to create a protocol that can be used to analyse cyanobacterial physiological state effectively

Atomically-thin quantum dots integrated with lithium niobate photonic chips

The electro-optic, acousto-optic and nonlinear properties of lithium niobate make it a highly versatile material platform for integrated quantum photonic circuits. A prerequisite for quantum technology applications is the ability to efficiently integrate single photon sources, and to guide the generated photons through ad-hoc circuits. Here we report the integration of quantum dots in monolayer WSe2 into a Ti in-diffused lithium niobate directional coupler. We investigate the coupling of individual quantum dots to the waveguide mode, their spatial overlap, and the overall efficiency of the hybrid-integrated photonic circuit

Dusty gas with SPH - II. Implicit timestepping and astrophysical drag regimes

In a companion paper (Laibe & Price 2011b), we have presented an algorithm for simulating two-fluid gas and dust mixtures in Smoothed Particle Hydrodynamics (SPH). In this paper, we develop an implicit timestepping method that preserves the exact conservation of the both linear and angular momentum in the underlying SPH algorithm, but unlike previous schemes, allows the iterations to converge to arbitrary accuracy and is suited to the treatment of non- linear drag regimes. The algorithm presented in Paper I is also extended to deal with realistic astrophysical drag regimes, including both linear and non-linear Epstein and Stokes drag. The scheme is benchmarked against the test suite presented in Paper I, including i) the analytic solutions of the dustybox problem and ii) solutions of the dustywave, dustyshock, dustysedov and dustydisc obtained with explicit timestepping. We find that the implicit method is 1- 10 times faster than the explicit temporal integration when the ratio r between the the timestep and the drag stopping time is 1 < r < 1000.Comment: Accepted for publication in MNRA

Mining Deep-Ocean Mineral Deposits: What are the Ecological Risks?

A key question for the future management of the oceans is whether the mineral deposits that exist on the seafloor of the deep ocean can be extracted without significant adverse effects to the environment. The potential impacts of mining are wide-ranging and will vary depending on the type of metal-rich mineral deposit being mined. There is, currently, a significant lack of information about deep-ocean ecosystems and about potential mining technologies: thus, there could be many unforeseen impacts. Here, we discuss the potential ecological impacts of deep-ocean mining and identify the key knowledge gaps to be addressed. Baseline studies must be undertaken, as well as regular monitoring of a mine area, before, during, and after mineral extraction

Kinetics of CO2-fluid-rock reactions in a basalt aquifer, Soda Springs, Idaho

The dissolution of silicate minerals by CO2-rich fluids and the subsequent precipitation of CO2 as carbonate minerals represent a means of permanently storing anthropogenic CO2 waste products in a solid and secure form. Modelling the progression of these reactions is hindered by our poor understanding of the rates of mineral dissolution–precipitation reactions and mineral surface properties in natural systems. This study evaluates the chemical evolution of groundwater flowing through a basalt aquifer, which forms part of the leaking CO2-charged system of the Blackfoot Volcanic Field in south-eastern Idaho, USA. Reaction progress is modelled using changes in groundwater chemistry by inverse mass balance techniques. The CO2-promoted fluid–mineral reactions include the dissolution of primary plagioclase, orthoclase, pyroxene and gypsum which is balanced by the precipitation of secondary albite, calcite, zeolite, kaolinite and silica. Mineral mole transfers and groundwater flow rates estimated from hydraulic head data are used to determine the kinetics of plagioclase and orthoclase feldspar dissolution. Plagioclase surface area measurements were determined using the evolution of the U-series isotope ratios in the groundwater and are compared to published surface area measurements. Calculated rates of dissolution for plagioclase range from 2.4 × 10−12 to 4.6 × 10−16 mol/m2/s and orthoclase from 2.0 × 10−13 to 6.8 × 10−16 mol/m2/s respectively. These feldspar reaction rates, correlate with the degree of mineral–fluid disequilibrium and are similar to the dissolution rates for these mineral measured in other natural CO2-charged groundwater systems