Orientability of Phylogenetic Network Graphs

Traditionally, genetic history of species has been modeled using phylogenetic trees. Recently, scientists have begun using phyolgenetic networks to model more complex occurrences, such as hybridization, which cannot be displayed by trees. Phylogenetic networks are represented by network graphs which are trivalent, directed graphs without directed circuits. In this paper we discuss the mathematics of network graphs. Given an unoriented trivalent graph, we determine a necessary and sufficient condition for orienting the graph as a network graph

Semantics for Noninterference with Interaction Trees

Noninterference is the strong information-security property that a program does not leak secrets through publicly-visible behavior. In the presence of effects such as nontermination, state, and exceptions, reasoning about noninterference quickly becomes subtle. We advocate using interaction trees (ITrees) to provide compositional mechanized proofs of noninterference for multi-language, effectful, nonterminating programs, while retaining executability of the semantics. We develop important foundations for security analysis with ITrees: two indistinguishability relations, leading to two standard notions of noninterference with adversaries of different strength, along with metatheory libraries for reasoning about each. We demonstrate the utility of our results using a simple imperative language with embedded assembly, along with a compiler into that assembly language

Semantics for Noninterference with Interaction Trees (Artifact)

Noninterference is the strong information-security property that a program does not leak secrets through publicly-visible behavior. In the presence of effects such as nontermination, state, and exceptions, reasoning about noninterference quickly becomes subtle. We advocate using interaction trees (ITrees) to provide compositional mechanized proofs of noninterference for multi-language, effectful, nonterminating programs, while retaining executability of the semantics. We develop important foundations for security analysis with ITrees: two indistinguishability relations, leading to two standard notions of noninterference with adversaries of different strength, along with metatheory libraries for reasoning about each. We demonstrate the utility of our results using a simple imperative language with embedded assembly, along with a compiler into that assembly language

PIEs: Public Incompressible Encodings for Decentralized Storage

We present a new primitive supporting file replication in distributed storage networks (DSNs) called a Public Incompressible Encoding (PIE). PIEs operate in the challenging public DSN setting where files must be encoded and decoded with public randomness—i.e., without encryption—and retention of redundant data must be publicly verifiable. They prevent undetectable data compression, allowing DSNs to use monetary rewards or penalties in incentivizing economically rational servers to properly replicate data. Their definition also precludes critical, demonstrated attacks involving parallelism via ASICs and other custom hardware. Our PIE construction is the first to achieve experimentally validated near-optimal performance—within a factor of 4 of optimal by one metric. It also allows decoding orders of magnitude faster than encoding, unlike other comparable constructions. We achieve this high security and performance using a graph construction called a Dagwood Sandwich Graph (DSaG), built from a novel interleaving of depth-robust graphs and superconcentrators. PIEs\u27 performance makes them appealing for DSNs, such as the proposed Filecoin system and Ethereum data sharding. Conversely, their near-optimality establishes concerning bounds on the practical financial and energy costs of DSNs allowing arbitrary data

First-Order Logic for Flow-Limited Authorization

We present the Flow-Limited Authorization First-Order Logic (FLAFOL), a logic for reasoning about authorization decisions in the presence of information-flow policies. We formalize the FLAFOL proof system, characterize its proof-theoretic properties, and develop its security guarantees. In particular, FLAFOL is the first logic to provide a non-interference guarantee while supporting all connectives of first-order logic. Furthermore, this guarantee is the first to combine the notions of non-interference from both authorization logic and information-flow systems. All theorems in this paper are proven in Coq.Comment: Coq code can be found at https://github.com/FLAFOL/flafol-co

Town Crier: An Authenticated Data Feed for Smart Contracts

Smart contracts are programs that execute autonomously on blockchains. Their key envisioned uses (e.g. financial instruments) require them to consume data from outside the blockchain (e.g. stock quotes). Trustworthy data feeds that support a broad range of data requests will thus be critical to smart contract ecosystems. We present an authenticated data feed system called Town Crier (TC). TC acts as a bridge between smart contracts and existing web sites, which are already commonly trusted for non-blockchain applications. It combines a blockchain front end with a trusted hardware back end to scrape HTTPS- enabled websites and serve source-authenticated data to re- lying smart contracts. TC also supports confidentiality; it enables private data requests with encrypted parameters and secure use of user credentials to scrape access-controlled on- line data sources. We describe TC’s design principles and architecture and report on an implementation that uses Intel’s recently introduced Software Guard Extensions (SGX) to furnish data to the Ethereum smart contract system. We formally model TC and define and prove its basic security properties in the Universal Composability (UC) framework. Our results include definitions and techniques of general interest relating to resource consumption (Ethereum’s “gas” fee system) and TCB minimization. We also report on experiments with three example applications. We plan to launch TC soon as an online public service

Solidus: Confidential Distributed Ledger Transactions via PVORM

Blockchains and more general distributed ledgers are becoming increasingly popular as efficient, reliable, and persistent records of data and transactions. Unfortunately, they ensure reliability and correctness by making all data public, raising confidentiality concerns that eliminate many potential uses. In this paper we present Solidus, a protocol for confidential transactions on public blockchains, such as those required for asset transfers with on-chain settlement. Solidus operates in a framework based on real-world financial institutions: a modest number of banks each maintain a large number of user accounts. Within this framework, Solidus hides both transaction values and the transaction graph (i.e., the identities of transacting entities) while maintaining the public verifiability that makes blockchains so appealing. To achieve strong confidentiality of this kind, we introduce the concept of a Publicly-Verifiable Oblivious RAM Machine (PVORM). We present a set of formal security definitions for both PVORM and Solidus and show that our constructions are secure. Finally, we implement Solidus and present a set of benchmarks indicating that the system is efficient in practice

Mechanisms for Provable Integrity Protection in Decentralized Systems

284 pagesDecentralized systems are built from a set of coordinating independent services. Yet these services might not trust each other, making it difficult to maintain the integrity of the whole application. This dissertation explores two different approaches to achieving provable integrity guarantees in such systems. The first technique, realized in Solidus, applies cryptographic tools to provably preserve the integrity of a blockchain-based financial transaction system while hiding the sender, receiver, and value of each transaction. The second complements the cryptographic approach by showing how to achieve strong integrity guarantees for realistic systems using language-based Information Flow Control (IFC). Traditional IFC systems only provide strong integrity guarantees in the absence of endorsement---treating inputs as more trusted than their source---but endorsement is necessary in real-world systems. This work classifies two ways in which unrestricted endorsements can compromise system integrity if attackers violate implicit assumptions. In both cases, IFC ideas help define security and support language-based rules to provably eliminate all attacks in the class