Quick method for producing template for PCR from Neurospora cultures

We have used the following method routinely for the past year and found it reliable even in undergraduate classes

Polymorphism in the 3 flank of his-3 and the origin of Neurospora wild-types

The legitimacy of classic wild-type strains deposited in the FGSC has been assessed by examining polymorphisms (Newmeyer et al. 1987 Neurospora Newsl. 34:46-51; Catcheside, D.G. 1975 Aust J Biol Sci 28:213-225). These studies show that Lindegren a (FGSC 541), Lindegren 1A (FGSC 354), Abbott 12a (FGSC 1758) and St Lawrence 79a (FGSC 533) are probably not authentic. We have examined the cog-region (distal of histidine-3 on Linkage Group I) in a number of strains and found four different RFLP variants, a different one in each of the alleged progenitor stocks of the modern laboratory strains (Yeadon and Catcheside, 1995. Curr. Genet., in press). The pedigree diagram (based on Catcheside 1975 and Newmeyer et al. 1987) shows the cog-region variant present in each of the strains we examined. Our nomenclature for cogalleles reflects the first strain in which it was found, for example cogEa in Ema. FGSC stock numbers are shown below the strain name. T391, our laboratory stock number, contains his-3 K26, a mutant generated (Angel et al. 1970. Aust J Biol Sci 23:1229-1240) in Lindegren Y8743 (Barratt and Garnjobst, 1949. Genetics 34:351-369)

DNA sequence of histidine-3 from two Neurospora wild-types.

We report sequence differences between laboratory strains of Neurospora within his-3,and corrections to published sequence for this locus for ST74A strains, of possible significance to experiments using histidine mutants for gene replacement and gene targeting

Beyond traditional wind farm noise characterisation using transfer learning

Published Online: 10 May 2022This study proposes an approach for the characterisation and assessment of wind farm noise (WFN), which is based on extraction of acoustic features between 125 and 7500 Hz from a pretrained deep learning model (referred to as deep acoustic features). Using data measured at a variety of locations, this study shows that deep acoustic features can be linked to meaningful characteristics of the noise. This study finds that deep acoustic features can reveal an improved spatial and temporal representation of WFN compared to what is revealed using traditional spectral analysis and overall noise descriptors. These results showed that this approach is promising, and thus it could provide the basis for an improved framework for WFN assessment in the future.Phuc D. Nguyen, Kristy L. Hansen, Bastien Lechat, Branko Zajamsek, Colin Hansen, and Peter Catchesid

Dual community assembly processes in dryland biocrust communities

1. Biocrusts are critical components of drylands where they regulate a wide range of ecosystem functions, however, their response to the world‐wide phenomenon of shrub encroachment and to livestock grazing, the most extensive land use in drylands, is not well studied. Grazing by livestock and increases in shrub cover could influence biocrust communities directly via trampling or shading, or indirectly, by altering biotic interactions amongst biocrust taxa. The extent of these changes in biocrust cover, diversity and composition are poorly known. 2. We used linear models and structural equation modelling to examine the direct effects of grazing and shrubs on biocrust community composition and the indirect effects mediated by changes in species interactions. 3. Biocrust richness and cover increased with increasing shrub cover at the site level. This pattern occurred despite the negative response we found (lower cover and richness) under shrub patches versus open areas, which was consistent irrespective of the grazing level. Functional diversity and evenness were similar between shrubs and open at low grazing intensity, but at high grazing functional diversity was greater in the open. Competition between biocrust species was an important driver of their community assembly irrespective of shrub cover, grazing intensity or patch type. Structural equation models showed that the effects of grazing and shrub cover on functional evenness, functional diversity and richness were controlled by biotic interactions within the shrub microsites. In the open, however, these effects were either direct or mediated by changes in cover. 4. Biocrust cover, species richness and functional diversity increase with shrub cover at the site scale, despite the negative effects at the microsite level. We demonstrate here that drivers of community assembly differ markedly at small spatial scales. Though biocrust communities were directly driven by environmental filtering in the open, biotic interactions played a fundamental role in their assembly when growing beneath shrubs.Both authors acknowledge support from the Hermon Slade Foundation Grant no. HSF13/1. S.S. was supported by the Spanish Government under the Ramón y Cajal contract (RYC-2016-20604)

Reply to Martinez-Garcia et al. and to Abreu and Punjabi

Abstract not availableBastien Lechat, Ph.D., Peter Catcheside, Ph.D. Amy Reynolds, Ph.D. Robert J. Adams, M.D. R. Doug McEvoy, M.D. Danny J. Eckert, Ph.D

Multi-night measurement for diagnosis and simplified monitoring of obstructive sleep apnoea

Substantial night-to-night variability in obstructive sleep apnoea (OSA) severity has raised misdiagnosis and misdirected treatment concerns with the current prevailing single-night diagnostic approach. In-home, multinight sleep monitoring technology may provide a feasible complimentary diagnostic pathway to improve both the speed and accuracy of OSA diagnosis and monitor treatment efficacy. This review describes the latest evidence on night-to-night variability in OSA severity, and its impact on OSA diagnostic misclassification. Emerging evidence for the potential impact of night-to-night variability in OSA severity to influence important health risk outcomes associated with OSA is considered. This review also characterises emerging diagnostic applications of wearable and non-wearable technologies that may provide an alternative, or complimentary, approach to traditional OSA diagnostic pathways. The required evidence to translate these devices into clinical care is also discussed. Appropriately sized randomised controlled trials are needed to determine the most appropriate and effective technologies for OSA diagnosis, as well as the optimal number of nights needed for accurate diagnosis and management. Potential risks versus benefits, patient perspectives, and cost-effectiveness of these novel approaches should be carefully considered in future trials.Bastien Lechat, Hannah Scott, Jack Manners, Robert Adams, Simon Proctor, Sutapa Mukherjee, Peter Catcheside, Danny J. Eckert, Andrew Vakulin, Amy C. Reynold

Subjective hunger, gastric upset, and sleepiness in response to altered meal timing during simulated shiftwork

Shiftworkers report eating during the night when the body is primed to sleep. This study investigated the impact of altering food timing on subjective responses. Healthy participants (n = 44, 26 male, age Mean ± SD = 25.0 ± 2.9 years, BMI = 23.82 ± 2.59kg/m2) participated in a 7-day simulated shiftwork protocol. Participants were randomly allocated to one of three eating conditions. At 00:30, participants consumed a meal comprising 30% of 24 h energy intake (Meal condition; n = 14, 8 males), a snack comprising 10% of 24 h energy intake (Snack condition; n = 14; 8 males) or did not eat during the night (No Eating condition; n = 16, 10 males). Total 24 h individual energy intake and macronutrient content was constant across conditions. During the night, participants reported hunger, gut reaction, and sleepiness levels at 21:00, 23:30, 2:30, and 5:00. Mixed model analyses revealed that the snack condition reported significantly more hunger than the meal group (p < 0.001) with the no eating at night group reporting the greatest hunger (p < 0.001). There was no difference in desire to eat between meal and snack groups. Participants reported less sleepiness after the snack compared to after the meal (p < 0.001) or when not eating during the night (p < 0.001). Gastric upset did not differ between conditions. A snack during the nightshift could alleviate hunger during the nightshift without causing fullness or increased sleepiness.Charlotte C Gupta, Stephanie Centofanti, Jillian Dorrian , Alison M Coates, Jacqueline M Stepien, David Kennaway, Gary Wittert, Leonie Heilbronn, Peter Catcheside, Manny Noakes, Daniel Coro, Dilushi Chandrakumar and Siobhan Bank

Establishing the acute physiological and sleep disruption characteristics of wind farm versus road traffic noise disturbances in sleep: a randomized controlled trial protocol

Advance access publication 6 September 2023Study Objectives: Despite the global expansion of wind farms, effects of wind farm noise (WFN) on sleep remain poorly understood. This protocol details a randomized controlled trial designed to compare the sleep disruption characteristics of WFN versus road traffic noise (RTN). Methods: This study was a prospective, seven night within-subjects randomized controlled in-laboratory polysomnography-based trial. Four groups of adults were recruited from; 15 s events) from sleep by each noise type with acute (20-s) and more sustained (3-min) noise exposures. Secondary analyses will compare dose–response effects of sound pressure level and noise type on EEG K-complex probabilities and quantitative EEG measures, and cardiovascular activation responses. Group effects, self-reported noise sensitivity, and wake versus sleep noise exposure effects will also be examined. Conclusions: This study will help to clarify if wind farm noise has different sleep disruption characteristics compared to road traffic noise.Gorica Micic, Branko Zajamsek, Bastien Lechat, Kristy Hansen, Hannah Scott, Barbara Toson, Tessa Liebich, Claire Dunbar, Duc Phuc Nguyen, Felix Decup, Andrew Vakulin, Nicole Lovato, Leon Lack, Colin Hansen, Dorothy Bruck, Ching Li Chai-Coetzer, Jeremy Mercer, Con Doolan and Peter Catchesid