20 research outputs found

    Neuromatch Academy: a 3-week, online summer school in computational neuroscience

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    Arthroscopic surgical procedures versus sham surgery for patients with femoroacetabular impingement and/or labral tears: study protocol for a randomized controlled trial (HIPARTI) and a prospective cohort study (HARP)

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    Study Design Study protocol for a randomized controlled trial and a prospective cohort. Background The number of arthroscopic surgical procedures for patients with femoroacetabular impingement syndrome (FAIS) has significantly increased worldwide, but high-quality evidence of the effect of such interventions is lacking. Objectives The primary objective will be to determine the efficacy of hip arthroscopic procedures compared to sham surgery on patient-reported outcomes for patients with FAIS (HIP ARThroscopy International [HIPARTI] Study). The secondary objective will be to evaluate prognostic factors for long-term outcome after arthroscopic surgical interventions in patients with FAIS (Hip ARthroscopy Prospective [HARP] Study). Methods The HIPARTI Study will include 140 patients and the HARP Study will include 100 patients. The international Hip Outcome Tool-33 will be the primary outcome measure at 1 year. Secondary outcome measures will be the Hip disability and Osteoarthritis Outcome Score, Arthritis Self-Efficacy Scale, fear of movement (Tampa Scale of Kinesiophobia), Patient-Specific Functional Scale, global rating of change score, and expectations. Other outcomes will include active hip range of motion, hip muscle strength tests, functional performance tests, as well as radiological assessments using radiographs and magnetic resonance imaging. Conclusion To determine the true effect of surgery, beyond that of placebo, double-blinded placebo-controlled trials including sham surgery are needed. The HIPARTI Study will direct future evidence-based treatment of FAIS. Predictors for long-term development and progression of degenerative changes in the hip are also needed for this young patient group with FAIS; hence, responders and nonresponders to treatment could be determined.</p

    Omnipose: a high-precision morphology-independent solution for bacterial cell segmentation

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    Advances in microscopy hold great promise for allowing quantitative and precise measurement of morphological and molecular phenomena at the single-cell level in bacteria; however, the potential of this approach is ultimately limited by the availability of methods to faithfully segment cells independent of their morphological or optical characteristics. Here, we present Omnipose, a deep neural network image-segmentation algorithm. Unique network outputs such as the gradient of the distance field allow Omnipose to accurately segment cells on which current algorithms, including its predecessor, Cellpose, produce errors. We show that Omnipose achieves unprecedented segmentation performance on mixed bacterial cultures, antibiotic-treated cells and cells of elongated or branched morphology. Furthermore, the benefits of Omnipose extend to non-bacterial subjects, varied imaging modalities and three-dimensional objects. Finally, we demonstrate the utility of Omnipose in the characterization of extreme morphological phenotypes that arise during interbacterial antagonism. Our results distinguish Omnipose as a powerful tool for characterizing diverse and arbitrarily shaped cell types from imaging data.This work was supported by the National Institutes of Health (AI080609 to J.D.M., GM128191 to P.A.W., R01-GM128191 to T.W.L. and T32-GM008268 to K.J.C.). L.R. and N.S. were funded by the European Research Council under the European Union’s Horizon 2020 Research and Innovation Programme (grant agreement no. 852201), the Spanish Ministry of Economy, Industry and Competitiveness to the EMBL partnership, the Centro de Excelencia Severo Ochoa (CEX2020-001049-S, MCIN/AEI /10.13039/501100011033), the CERCA Programme/Generalitat de Catalunya and the Spanish Ministry of Economy, Industry and Competitiveness Excelencia award PID2020-115189GB-I00. C.S. was funded by the Howard Hughes Medical Institute at the Janelia Research Campus. J.D.M. is an HHMI Investigator

    Unravelling the hip pistol grip/cam deformity: Origins to joint degeneration

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    This article reviews a body of work performed by the investigators over 9 years that has addressed the significance of cam morphology in the development of hip osteoarthritis (OA). Early hip joint degeneration is a common clinical presentation and preexisting abnormal joint morphology is a risk factor for its development. Interrogating Hill's criteria, we tested whether cam-type femoroacetabular impingement leads to hip OA. Strength of association was identified between cam morphology, reduced range-of-movement, hip pain, and cartilage degeneration. By studying a pediatric population, we were able to characterize the temporality between cam morphology (occurring 1st) and joint degeneration. Using in silico (finite element) and in vivo (imaging biomarkers) studies, we demonstrated the biological plausibility of how a cam deformity can lead to joint degeneration. Furthermore, we were able to show a biological gradient between degree of cam deformity and extent of articular damage. However, not all patients develop joint degeneration and we were able to characterize which factors contribute to this (specificity). Lastly, we were able to show that by removing the cam morphology, one could positively influence the degenerative process (experiment). The findings of this body of work show consistency and coherence with the literature. Furthermore, they illustrate how cam morphology can lead to early joint degeneration analogous to SCFE, dysplasia, and joint mal-reduction post-injury. The findings of this study open new avenues on the association between cam morphology and OA including recommendations for the study, screening, follow-up, and assessment (patient-specific) of individuals with cam morphology in order to prevent early joint degeneration. Statement of significance: By satisfying Hill's criteria, one can deduct that in some individuals, cam morphology is a cause of OA

    Crescimento relativo em Uca leptodactyla Rathbun (Crustacea Decapoda Ocypodidae) Relative growth in the fiddler crab Uca leptodactyla Rathbun (Crustacea Decapoda Ocypodidae)

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    <abstract language="eng">Relative growth of the male major chela and female abdome was studied in a population of the fiddler crab Uca leptodactyla Rathbun, 1898 from Itapoá, Santa Catarina coast, southern Brazil. Major chela length (CMQ) was measured from 191 males, and abdomen width (LAB) from 128 females. Carapace width (LC) was the reference dimension for both sexes, which ranged from 3.9 to 11.5 mm for males, and from 3.15 to 10.65 mm for females. Males grew bigger than females. Relationship between CMQ and LC showed a transition point at 8.35 mm LC in males, and between LA and LC at 7.10 mm LC in females. Growth was allometrically positive in the early ontogenesis and isometric after the puberal molting for both sexes. Regressions between LC and CMQ in males read as: logCMQ = -0,854536 + 2,19. logLC for empirical points at left of critical point and logCMQ = 0,063047 + 1,24. logLC for those at right. In females, this relation was logLAB = -0,603590 + 1,30. logLC and logLAB = -0,361464 + 1,07. logLC, respectively. These body dimensions were connected with reproductive activity of this species
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