The Folks Next Door (September 29-30, October 1, 2011)

Program for The Folks Next Door (September 29-30, October 1, 2011). To view the photos from this production of The Folks Next Door , please click here

Disproportionate Carbon Dioxide Efflux in Bacterial Metabolic Pathways for Different Organic Substrates Leads to Variable Contribution to Carbon-Use Efficiency

Microbial organic matter turnover is an important contributor to the terrestrial carbon dioxide (CO2) budget. Partitioning of organic carbons into biomass relative to CO2 efflux, termed carbon-use efficiency (CUE), is widely used to characterize organic carbon cycling by soil microorganisms. Recent studies challenge proposals of CUE dependence on the oxidation state of the substrate carbon and implicate instead metabolic strategies. Still unknown are the metabolic mechanisms underlying variability in CUE. We performed a multiomics investigation of these mechanisms in Pseudomonas putida, a versatile soil bacterium of the Gammaproteobacteria, processing a mixture of plant matter derivatives. Our 13C-metabolomics data captured substrate carbons into different metabolic pathways: cellulose-derived sugar carbons in glycolytic and pentose-phosphate pathways; lignin-related aromatic carbons in the tricarboxylic acid cycle. Subsequent 13C-metabolic flux analysis revealed a 3-fold lower investment of sugar carbons in CO2 efflux compared to aromatic carbons, in agreement with reported substrate-dependent CUE. Proteomics analysis revealed enzyme-level regulation only for substrate uptake and initial catabolism, which dictated downstream fluxes through CO2-producing versus biomass-synthesizing reactions. Metabolic partitioning as shown here explained the substrate-dependent CUE calculated from reported metabolic flux analyses of other bacteria, further supporting a metabolism-guided perspective for predicting the microbial conversion of accessible organic matter to CO2 efflux

The Quantum Mechanics of Hyperion

This paper is motivated by the suggestion [W. Zurek, Physica Scripta, T76, 186 (1998)] that the chaotic tumbling of the satellite Hyperion would become non-classical within 20 years, but for the effects of environmental decoherence. The dynamics of quantum and classical probability distributions are compared for a satellite rotating perpendicular to its orbital plane, driven by the gravitational gradient. The model is studied with and without environmental decoherence. Without decoherence, the maximum quantum-classical (QC) differences in its average angular momentum scale as hbar^{2/3} for chaotic states, and as hbar^2 for non-chaotic states, leading to negligible QC differences for a macroscopic object like Hyperion. The quantum probability distributions do not approach their classical limit smoothly, having an extremely fine oscillatory structure superimposed on the smooth classical background. For a macroscopic object, this oscillatory structure is too fine to be resolved by any realistic measurement. Either a small amount of smoothing (due to the finite resolution of the apparatus) or a very small amount of environmental decoherence is sufficient ensure the classical limit. Under decoherence, the QC differences in the probability distributions scale as (hbar^2/D)^{1/6}, where D is the momentum diffusion parameter. We conclude that decoherence is not essential to explain the classical behavior of macroscopic bodies.Comment: 17 pages, 24 figure

Contributions to the Power Spectrum of Cosmic Microwave Background from Fluctuations Caused by Clusters of Galaxies

We estimate the contributions to the cosmic microwave background radiation (CMBR) power spectrum from the static and kinematic Sunyaev-Zel'dovich (SZ) effects, and from the moving cluster of galaxies (MCG) effect. We conclude, in agreement with other studies, that at sufficiently small scales secondary fluctuations caused by clusters provide important contributions to the CMBR. At $\ell \gtrsim 3000$, these secondary fluctuations become important relative to lensed primordial fluctuations. Gravitational lensing at small angular scales has been proposed as a way to break the ``geometric degeneracy'' in determining fundamental cosmological parameters. We show that this method requires the separation of the static SZ effect, but the kinematic SZ effect and the MCG effect are less important. The power spectrum of secondary fluctuations caused by clusters of galaxies, if separated from the spectrum of lensed primordial fluctuations, might provide an independent constraint on several important cosmological parameters.Comment: LateX, 41 pages and 10 figures. Accepted for publication in the Astrophysical Journa

On induced CPT-odd Chern-Simons terms in 3+1 effective action

This paper was originally designated as Comment to the paper by R. Jackiw and V. Alan Kostelecky (hep-ph/9901358). We provide an example of the fermionic system, the superfluid 3He-A, in which the CPT-odd Chern-Simons terms in the effective action are unambiguously induced by chiral fermions. In this system the Lorentz and gauge invariances both are violated at high energy, but the behavior of the system beyond the cut-off is known. This allows us to construct the CPT-odd action, which combines the conventional 3+1 Chern-Simons term and the mixed axial-gravitational Chern-Simons term discussed in hep-ph/9905460. The influence of Chern-Simons term on the dynamics of the effective gauge field has been experimentally observed in rotating 3He-A.Comment: RevTex, 3 pages, no figures, extended version of Comment to the paper by R. Jackiw and V. Alan Kostelecky (hep-ph/9901358), to appear in JETP Let

Behavioral Inhibition as a Risk Factor for the Development of Childhood Anxiety Disorders: A Longitudinal Study

This longitudinal study examined the additive and interactive effects of behavioral inhibition and a wide range of other vulnerability factors in the development of anxiety problems in youths. A sample of 261 children, aged 5 to 8 years, 124 behaviorally inhibited and 137 control children, were followed during a 3-year period. Assessments took place on three occasions to measure children’s level of behavioral inhibition, anxiety disorder symptoms, other psychopathological symptoms, and a number of other vulnerability factors such as insecure attachment, negative parenting styles, adverse life events, and parental anxiety. Results obtained with Structural Equation Modeling indicated that behavioral inhibition primarily acted as a specific risk factor for the development of social anxiety symptoms. Furthermore, the longitudinal model showed additive as well as interactive effects for various vulnerability factors on the development of anxiety symptoms. That is, main effects of anxious rearing and parental trait anxiety were found, whereas behavioral inhibition and attachment had an interactive effect on anxiety symptomatology. Moreover, behavioral inhibition itself was also influenced by some of the vulnerability factors. These results provide support for dynamic, multifactorial models for the etiology of child anxiety problems

Modelling Clock Synchronization in the Chess gMAC WSN Protocol

We present a detailled timed automata model of the clock synchronization algorithm that is currently being used in a wireless sensor network (WSN) that has been developed by the Dutch company Chess. Using the Uppaal model checker, we establish that in certain cases a static, fully synchronized network may eventually become unsynchronized if the current algorithm is used, even in a setting with infinitesimal clock drifts

Target mass number dependence of subthreshold antiproton production in proton-, deuteron- and alpha-particle-induced reactions

Data from KEK on subthreshold \bar{\mrm{p}} as well as on $\pi^\pm$ and \mrm{K}^\pm production in proton-, deuteron- and $\alpha$-induced reactions at energies between 2.0 and 12.0 A GeV for C, Cu and Pb targets are described within a unified approach. We use a model which considers a nuclear reaction as an incoherent sum over collisions of varying numbers of projectile and target nucleons. It samples complete events and thus allows for the simultaneous consideration of all final particles including the decay products of the nuclear residues. The enormous enhancement of the \bar{\mrm{p}} cross section, as well as the moderate increase of meson production in deuteron and $\alpha$ induced compared to proton-induced reactions, is well reproduced for all target nuclei. In our approach, the observed enhancement near the production threshold is mainly due to the contributions from the interactions of few-nucleon clusters by simultaneously considering fragmentation processes of the nuclear residues. The ability of the model to reproduce the target mass dependence may be considered as a further proof of the validity of the cluster concept.Comment: 9 pages, 4 figure

Vascular Endothelial Growth Factor-Related Pathways in Hemato-Lymphoid Malignancies

Angiogenesis is essential for malignant tumor growth. This has been documented for solid tumors, and there is an emerging evidence suggesting that tumor progression of hematolymphoid malignancies also depends on the induction of new blood vessel formation. The most important proangiogenic agent is vascular endothelial growth factor (VEGF), activating VEGF receptors 1 and 2. The available data on angiogenesis in hemato-lymphoid malignancies, such as acute leukemias, myelodysplastic syndromes, myeloproliferative neoplasms, multiple myeloma, and lymphomas, point towards the significance of autocrine and paracrine VEGF-mediated effects for proliferation and survival of leukemia/lymphoma cells in addition to tumor vascularization. Antiangiogenic strategies have become an important therapeutic modality for solid tumors. Several antiangiogenic agents targeting VEGF-related pathways are also being utilized in clinical trials for the treatment of hemato-lymphoid malignancies, and in some instances these pathways have emerged as promising therapeutic targets. This review summarizes recent advances in the basic understanding of the role of angiogenesis in hemato-lymphoid malignancies and the translation of such basic findings into clinical studies

Color Transparency Effects in Electron Deuteron Interactions at Intermediate Q^2

High momentum transfer electrodisintegration of polarized and unpolarized deuterium targets, $d(e,e'p)n$ is studied. We show that the importance of final state interactions-FSI, occuring when a knocked out nucleon interacts with the other nucleon, depends strongly on the momentum of the spectator nucleon. In particular, these FSI occur when the essential contributions to the scattering amplitude arise from internucleon distances $\sim 1.5~fm$. But the absorption of the high momentum $\gamma^*$ may produce a point like configuration, which evolves with time. In this case, the final state interactions probe the point like configuration at the early stage of its evolution. The result is that significant color transparency effects, which can either enhance or suppress computed cross sections, are predicted to occur for $\sim 4 GeV^2 \ge Q^2\leq~10~(GeV/c)^2$.Comment: 37 pages LaTex, 12 uuencoded PostScript Figures as separate file, to be published in Z.Phys.