9,492 research outputs found
Vortices, shocks, and heating in the solar photosphere: effect of a magnetic field
Aims: We study the differences between non-magnetic and magnetic regions in
the flow and thermal structure of the upper solar photosphere. Methods:
Radiative MHD simulations representing a quiet region and a plage region,
respectively, which extend into the layers around the temperature minimum, are
analyzed. Results: The flow structure in the upper photospheric layers of the
two simulations is considerably different: the non-magnetic simulation is
dominated by a pattern of moving shock fronts while the magnetic simulation
shows vertically extended vortices associated with magnetic flux
concentrations. Both kinds of structures induce substantial local heating. The
resulting average temperature profiles are characterized by a steep rise above
the temperature minimum due to shock heating in the non-magnetic case and by a
flat photospheric temperature gradient mainly caused by Ohmic dissipation in
the magnetic run. Conclusions: Shocks in the quiet Sun and vortices in the
strongly magnetized regions represent the dominant flow structures in the
layers around the temperature minimum. They are closely connected with
dissipation processes providing localized heating.Comment: Accepted for publicaton in A&
Non-equilibrium hydrogen ionization in 2D simulations of the solar atmosphere
The ionization of hydrogen in the solar chromosphere and transition region
does not obey LTE or instantaneous statistical equilibrium because the
timescale is long compared with important hydrodynamical timescales, especially
of magneto-acoustic shocks. We implement an algorithm to compute
non-equilibrium hydrogen ionization and its coupling into the MHD equations
within an existing radiation MHD code, and perform a two-dimensional simulation
of the solar atmosphere from the convection zone to the corona. Analysis of the
simulation results and comparison to a companion simulation assuming LTE shows
that: a) Non-equilibrium computation delivers much smaller variations of the
chromospheric hydrogen ionization than for LTE. The ionization is smaller
within shocks but subsequently remains high in the cool intershock phases. As a
result, the chromospheric temperature variations are much larger than for LTE
because in non-equilibrium, hydrogen ionization is a less effective internal
energy buffer. The actual shock temperatures are therefore higher and the
intershock temperatures lower. b) The chromospheric populations of the hydrogen
n = 2 level, which governs the opacity of Halpha, are coupled to the ion
populations. They are set by the high temperature in shocks and subsequently
remain high in the cool intershock phases. c) The temperature structure and the
hydrogen level populations differ much between the chromosphere above
photospheric magnetic elements and above quiet internetwork. d) The hydrogen n
= 2 population and column density are persistently high in dynamic fibrils,
suggesting that these obtain their visibility from being optically thick in
Halpha also at low temperature.Comment: 10 pages, 4 figure
Parallel Mapper
The construction of Mapper has emerged in the last decade as a powerful and
effective topological data analysis tool that approximates and generalizes
other topological summaries, such as the Reeb graph, the contour tree, split,
and joint trees. In this paper, we study the parallel analysis of the
construction of Mapper. We give a provably correct parallel algorithm to
execute Mapper on multiple processors and discuss the performance results that
compare our approach to a reference sequential Mapper implementation. We report
the performance experiments that demonstrate the efficiency of our method
Order-N Density-Matrix Electronic-Structure Method for General Potentials
A new order-N method for calculating the electronic structure of general
(non-tight-binding) potentials is presented. The method uses a combination of
the ``purification''-based approaches used by Li, Nunes and Vanderbilt, and
Daw, and a representation of the density matrix based on ``travelling basis
orbitals''. The method is applied to several one-dimensional examples,
including the free electron gas, the ``Morse'' bound-state potential, a
discontinuous potential that mimics an interface, and an oscillatory potential
that mimics a semiconductor. The method is found to contain Friedel
oscillations, quantization of charge in bound states, and band gap formation.
Quantitatively accurate agreement with exact results is found in most cases.
Possible advantages with regard to treating electron-electron interactions and
arbitrary boundary conditions are discussed.Comment: 13 pages, REVTEX, 7 postscript figures (not quite perfect
Morphology and Dynamics of the Low Solar Chromosphere
The Interferometric Bidimensional Spectrometer (IBIS) installed at the Dunn
Solar Telescope of the NSO/SP is used to investigate the morphology and
dynamics of the lower chromosphere and the virtually non-magnetic fluctosphere
below. The study addresses in particular the structure of magnetic elements
that extend into these layers. We choose different quiet Sun regions in and
outside coronal holes. In inter-network regions with no significant magnetic
flux contributions above the detection limit of IBIS, we find intensity
structures with the characteristics of a shock wave pattern. The magnetic flux
elements in the network are long lived and seem to resemble the spatially
extended counterparts to the underlying photospheric magnetic elements. We
suggest a modification to common methods to derive the line-of-sight magnetic
field strength and explain some of the difficulties in deriving the magnetic
field vector from observations of the fluctosphere.Comment: accepted by ApJ, 16 pages, 8 figure
Second-harmonic generation in vortex-induced waveguides
We study the second-harmonic generation and localization of light in a
reconfigurable waveguide induced by an optical vortex soliton in a defocusing
Kerr medium. We show that the vortex-induced waveguide greatly improves
conversion efficiency from the fundamental to the second harmonic field.Comment: 3 pages, 4 figures, submitted to Optics Letter
Branching, Capping, and Severing in Dynamic Actin Structures
Branched actin networks at the leading edge of a crawling cell evolve via
protein-regulated processes such as polymerization, depolymerization, capping,
branching, and severing. A formulation of these processes is presented and
analyzed to study steady-state network morphology. In bulk, we identify several
scaling regimes in severing and branching protein concentrations and find that
the coupling between severing and branching is optimally exploited for
conditions {\it in vivo}. Near the leading edge, we find qualitative agreement
with the {\it in vivo} morphology.Comment: 4 pages, 2 figure
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