Sponge exhalent seawater contains a unique chemical profile of dissolved organic matter

© The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PeerJ 5 (2017): e2870, doi:10.7717/peerj.2870.Sponges are efficient filter feeders, removing significant portions of particulate and dissolved organic matter (POM, DOM) from the water column. While the assimilation and respiration of POM and DOM by sponges and their abundant microbial symbiont communities have received much attention, there is virtually no information on the impact of sponge holobiont metabolism on the composition of DOM at a molecular-level. We applied untargeted and targeted metabolomics techniques to characterize DOM in seawater samples prior to entering the sponge (inhalant reef water), in samples exiting the sponge (exhalent seawater), and in samples collected just outside the reef area (off reef seawater). Samples were collected from two sponge species, Ircinia campana and Spheciospongia vesparium, on a near-shore hard bottom reef in the Florida Keys. Metabolic profiles generated from untargeted metabolomics analysis indicated that many more compounds were enhanced in the exhalent samples than in the inhalant samples. Targeted metabolomics analysis revealed differences in diversity and concentration of metabolites between exhalent and off reef seawater. For example, most of the nucleosides were enriched in the exhalent seawater, while the aromatic amino acids, caffeine and the nucleoside xanthosine were elevated in the off reef water samples. Although the metabolic profile of the exhalent seawater was unique, the impact of sponge metabolism on the overall reef DOM profile was spatially limited in our study. There were also no significant differences in the metabolic profiles of exhalent water between the two sponge species, potentially indicating that there is a characteristic DOM profile in the exhalent seawater of Caribbean sponges. Additional work is needed to determine whether the impact of sponge DOM is greater in habitats with higher sponge cover and diversity. This work provides the first insight into the molecular-level impact of sponge holobiont metabolism on reef DOM and establishes a foundation for future experimental studies addressing the influence of sponge-derived DOM on chemical and ecological processes in coral reef ecosystems.This work was funded by 54 backers through the crowdfunding platform Experiment (https://experiment.com/projects/how-do-sponges-influence-the-availability-of-nutrients-on-coral-reefs)

Interannual Variation in Climate Contributes to Contingency in Post-Fire Restoration Outcomes in Seeded Sagebrush Steppe

Interannual variation, especially weather, is an often-cited reason for restoration “failures”; yet its importance is difficult to experimentally isolate across broad spatiotemporal extents, due to correlations between weather and site characteristics. We examined post-fire treatments within sagebrush-steppe ecosystems to ask: (1) Is weather following seeding efforts a primary reason why restoration outcomes depart from predictions? and (2) Does the management-relevance of weather differ across space and with time since treatment? Our analysis quantified range-wide patterns of sagebrush (Artemisia spp.) recovery, by integrating long-term records of restoration and annual vegetation cover estimates from satellite imagery following thousands of post-fire seeding treatments from 1984 to 2005. Across the Great Basin, sagebrush growth increased in wetter, cooler springs; however, the importance of spring weather varied with sites\u27 long-term climates, suggesting differing ecophysiological limitations across sagebrush\u27s range. Incorporation of spring weather, including from the “planting year,” improved predictions of sagebrush recovery, but these advances were small compared to contributions of time-invariant site characteristics. Given extreme weather conditions threatening this ecosystem, explicit consideration of weather could improve the allocation of management resources, such as by identifying areas requiring repeated treatments; but improved forecasts of shifting mean conditions with climate change may more significantly aid the prediction of sagebrush recovery

Información molecular vs información genealógica en la gestión de poblaciones

Tanto en el campo de la conservación como en el de la mejora genética, se han propuesto diversos métodos para gestionar una población controlando la pérdida de diversidad genética. En poblaciones no subdivididas, el método aceptado es determinar la contribución de cada posible padre (i.e., el número de descendientes que cada individuo deja a la siguiente generación), minimizando el parentesco global de los padres ponderado por estas contribuciones (Meuwissen, 1997; Grundy et al., 1998; Fernández et al., 2003). Los coeficientes de parentesco se obtienen normalmente de la genealogía, y en dicho caso, se optimiza el parentesco global genealógico. Sin embargo, la información genealógica no está siempre disponible, en cuyo caso se pueden usar marcadores moleculares para calcular el parentesco molecular o estimar el parentesco genealógico (Toro et al., 2009). Así, cuando no se dispone de genealogías, se puede minimizar el parentesco molecular global o el parentesco global genealógico estimado con los marcadores. Fernández et al. (2005) estudiaron mediante simulaciones la capacidad de la información molecular de reemplazar a la información genealógica, y concluyeron que el uso exclusivo de información molecular era claramente insuficiente. En dicho estudio, los autores se basaron en un número limitado de marcadores microsatélites, del orden de decenas. En la actualidad, gracias a los métodos de secuenciación de última generación, disponemos de miles de marcadores de tipo SNP, lo que hace necesaria una revisión de aquellas investigaciones que concluían que la utilidad de la información molecular era limitada e inferior a la genealógica. En este estudio, reevaluamos vía simulaciones la capacidad de la información genómica de reemplazar a la información genealógica para mantener diversidad genética en programas de conservación, usando un número de SNPs en línea con los datos actualmente disponible

The Physics of Supernova Remnant Blast Waves. I. Kinematics of DEM L71 in the Large Magellanic Cloud

We present the results from Fabry-Perot imaging spectroscopy of the Balmer-dominated supernova remnant DEM L71 (0505-67.9) in the LMC. Spectra extracted from the entire circumference of the blast wave reveal the broad and narrow component H-alpha line emission characteristic of non-radiative shocks in partially neutral gas. The new spectra of DEM L71 include portions of the rim that have not been previously observed. We find that the broad component width varies azimuthally along the edge of DEM L71, ranging from 450+/-60 km/s along the eastern edge to values as high as 985 (+210)(-165) km/s along the faint western edge. In part of the faint northern rim the broad component is not detected, possibly indicating a lower density in these regions and/or a broad component width in excess of 1000 km/s. Between the limits of zero and full electron-ion temperature equilibration at the shock front, the allowed range of shock velocities is 430-560 km/s along the east rim and 700-1250 km/s along other parts of the blast wave. The H-alpha broad-to-narrow flux ratios vary considerably around the remnant, ranging from 0.4 to 0.8. These ratios lie below the values predicted by our shock models. We find that narrow component H-alpha emission from a cosmic ray precursor may be the cause of the discrepancy. The least decelerated portions of the blast wave (i.e., regions excluding the brightest filaments) are well characterized by Sedov models with a kinetic energy E_51= (0.37+/-0.06)*D_50**(5/2), where D_50 is the LMC distance in units of 50 kpc. The corresponding age for DEM L71 is (4360+/-290)*D_50 yr. This is the first time that velocity information from the entire blast wave has been utilized to study the global kinematics of a non-radiative SNR at a known distance.Comment: 21 pages, including 8 postscript figures and 4 tables, LaTeX, accepted to ApJ; see companion pape

Global well-posedness for a Smoluchowski equation coupled with Navier-Stokes equations in 2D

We prove global existence for a nonlinear Smoluchowski equation (a nonlinear Fokker-Planck equation) coupled with Navier-Stokes equations in two dimensions. The proof uses a deteriorating regularity estimate and the tensorial structure of the main nonlinear terms

Farm-Based Programming for College Students Experiencing Food Insecurity

Student food insecurity is a concern at colleges and universities across the country, and Extension professionals can bring unique solutions to this growing problem. At Rutgers–New Brunswick, visitors to the Student Food Pantry receive vouchers for fresh produce to be redeemed at the New Brunswick Community Farmers Market. The Rutgers Gardens Student Farm makes weekly deliveries of fresh produce to the pantry, which is available at no cost to students. With creativity, Extension efforts such as master gardener programs, Supplemental Nutrition Assistance Program Education, and family and community health sciences programs can play an important role in alleviating college student food insecurity

Prevalence, underlying causes, and preventability of sepsis-associated mortality in US acute care hospitals

Importance: Sepsis is present in many hospitalizations that culminate in death. The contribution of sepsis to these deaths, and the extent to which they are preventable, is unknown. Objective: To estimate the prevalence, underlying causes, and preventability of sepsis-associated mortality in acute care hospitals. Design, Setting, and Participants: Cohort study in which a retrospective medical record review was conducted of 568 randomly selected adults admitted to 6 US academic and community hospitals from January 1, 2014, to December 31, 2015, who died in the hospital or were discharged to hospice and not readmitted. Medical records were reviewed from January 1, 2017, to March 31, 2018. Main Outcomes and Measures: Clinicians reviewed cases for sepsis during hospitalization using Sepsis-3 criteria, hospice-qualifying criteria on admission, immediate and underlying causes of death, and suboptimal sepsis-related care such as inappropriate or delayed antibiotics, inadequate source control, or other medical errors. The preventability of each sepsis-associated death was rated on a 6-point Likert scale. Results: The study cohort included 568 patients (289 [50.9%] men; mean [SD] age, 70.5 [16.1] years) who died in the hospital or were discharged to hospice. Sepsis was present in 300 hospitalizations (52.8%; 95% CI, 48.6%-57.0%) and was the immediate cause of death in 198 cases (34.9%; 95% CI, 30.9%-38.9%). The next most common immediate causes of death were progressive cancer (92 [16.2%]) and heart failure (39 [6.9%]). The most common underlying causes of death in patients with sepsis were solid cancer (63 of 300 [21.0%]), chronic heart disease (46 of 300 [15.3%]), hematologic cancer (31 of 300 [10.3%]), dementia (29 of 300 [9.7%]), and chronic lung disease (27 of 300 [9.0%]). Hospice-qualifying conditions were present on admission in 121 of 300 sepsis-associated deaths (40.3%; 95% CI 34.7%-46.1%), most commonly end-stage cancer. Suboptimal care, most commonly delays in antibiotics, was identified in 68 of 300 sepsis-associated deaths (22.7%). However, only 11 sepsis-associated deaths (3.7%) were judged definitely or moderately likely preventable; another 25 sepsis-associated deaths (8.3%) were considered possibly preventable. Conclusions and Relevance: In this cohort from 6 US hospitals, sepsis was the most common immediate cause of death. However, most underlying causes of death were related to severe chronic comorbidities and most sepsis-associated deaths were unlikely to be preventable through better hospital-based care. Further innovations in the prevention and care of underlying conditions may be necessary before a major reduction in sepsis-associated deaths can be achieved

A p53-Dependent Checkpoint Induced upon DNA Damage Alters Cell Fate during hiPSC Differentiation.

The ability of human induced pluripotent stem cells (hiPSCs) to differentiate in vitro to each of the three germ layer lineages has made them an important model of early human development and a tool for tissue engineering. However, the factors that disturb the intricate transcriptional choreography of differentiation remain incompletely understood. Here, we uncover a critical time window during which DNA damage significantly reduces the efficiency and fidelity with which hiPSCs differentiate to definitive endoderm. DNA damage prevents the normal reduction of p53 levels as cells pass through the epithelial-to-mesenchymal transition, diverting the transcriptional program toward mesoderm without induction of an apoptotic response. In contrast, TP53-deficient cells differentiate to endoderm with high efficiency after DNA damage, suggesting that p53 enforces a "differentiation checkpoint" in early endoderm differentiation that alters cell fate in response to DNA damage

Influencia de ciclos alternativos alimentación-ayuno sobre los principales enzimas del metabolismo renal de carbohidratos

Con objeto de explicar molecularmente los cambios descritos en el metabolismo renal de carbohidratos ( 1) se han estudiado los efectos que diferentes ciclos de alimentación y ayuno presentan sobre los principales enzimas implicados en los procesos glucolítico y gluconeogénico. En general durante el período de alimentación se activan los enzimas glucolíticos y se inhiben los gluconeogénicos .. Efectos opuestos se observan durante los períodos de ayuno. Estos resultados permiten concluir que la corteza renal es capaz de adaptar continuamente los mecanismos enzimáticos necesarios para ajustar el destino de macronutrientes tanto de procedencia exógena como endógena.In order to explain the changes previously described by us in the renal carbohydrate metabolism during different starved-feed cycles ( 1), the effects of this nutritional situation on the most important enzymes in volved in the glycolytic and gluconeogenic processes have been studied. In general, during the feed-state all the glycolytic enzymes increased its activities whereas a decrease was found in the gluconeogenic ones. Opposite effects were obtanined during starvation. Several mechanism of enzymatic regulation are shown throughout the development of these nutritional conditions