Quantum Darwinism in a structured spin environment

We examine the emergence and suppression of signatures of quantum Darwinism when the system of interest interacts with a complex, structured environment. We introduce an extended spin-star model where the system is coupled to N independent spin-chains. Each site of the chain then lives in a definite layer of the environment, and hence we term this the “onion” model. We fix the system-environment interaction such that classical objectivity is guaranteed if the environment consists of a single layer. Considering a fully factorized initial state for all constituent sub-systems, we then examine how the emergence and proliferation of signatures of quantum Darwinism are delicately dependent on the chain interaction, establishing that when the chains are considered as indivisible fragments to be interrogated, characteristic redundancy plateaux are always observed at least transiently. In contrast, observing a redundant encoding in a specific layer is highly sensitive to the nature of the interaction. Finally, we consider the case in which each chain is initialized in the ground state of the interaction Hamiltonian, establishing that this case shares the qualitative features of the factorized initial state case, however now the strength of the applied magnetic field has a significant impact on whether quantum Darwinism can be observed. We demonstrate that the presence or absence of quantum Darwinistic features can be understood by analysing the correlations within a layer using total mutual information and global quantum discord

2014 Dahlberg Award Winner: The effects of dietary toughness on occlusopalatal variation in savanna baboons

This study investigates the relationship between dietary toughness and craniofacial variation in two groups of savanna baboons. Standard craniofacial and malocclusion data were collected from a captive, soft-diet experiment group (n=24) and a sample of wild-captured baboons, raised on tougher, natural foods (n=19). We tested the hypothesis that in the absence of normal masticatory stress experienced during the consumption of wild foods, the captive baboons would exhibit higher levels of facial and dental structural irregularities. Principal component analysis indicates separation of the two samples. The soft-diet sample exhibits significantly shorter palates, greater variability in palate position, and higher frequencies of occlusal irregularities that correlate with the shorter palates. Results offer further support that long-term dietary chewing stresses have a measurable effect on adult craniofacial variation

Relationships between the hard and soft dimensions of the nose in Pan troglodytes and Homo sapiens reveal the positions of the nasal tips of Plio-Pleistocene hominids

By identifying homogeneity in bone and soft tissue covariation patterns in living hominids, it is possible to produce facial approximation methods with interspecies compatibility. These methods may be useful for producing facial approximations of fossil hominids that are more realistic than currently possible. In this study, we conducted an interspecific comparison of the nasomaxillary region in chimpanzees and modern humans with the aim of producing a method for predicting the positions of the nasal tips of Plio-Pleistocene hominids. We addressed this aim by first collecting and performing regression analyses of linear and angular measurements of nasal cavity length and inclination in modern humans (Homo sapiens; n = 72) and chimpanzees (Pan troglodytes; n = 19), and then performing a set of out-of-group tests. The first test was performed on four subjects that belonged to the same genus as the training sample, i.e., Homo (n = 2) and Pan (n = 2), and the second test, which functioned as an interspecies compatibility test, was performed on Pan paniscus (n = 1), Gorilla gorilla (n = 3), Pongo pygmaeus (n = 1), Pongo abelli (n = 1), Symphalangus syndactylus (n = 3), and Papio hamadryas (n = 3). We identified statistically significant correlations in both humans and chimpanzees with slopes that displayed homogeneity of covariation. Prediction formulae combining these data were found to be compatible with humans and chimpanzees as well as all other African great apes, i.e., bonobos and gorillas. The main conclusion that can be drawn from this study is that our set of regression models for approximating the position of the nasal tip are homogenous among humans and African apes, and can thus be reasonably extended to ancestors leading to these clades

Commutativity and the emergence of classical objectivity

We examine how the ability of a system to redundantly proliferate relevant information about its pointer states is affected when it is coupled to multiple baths. To this end, we consider a system in contact with two baths: one—termed the accessible environment —which, on its own, induces a pure dephasing mechanism on the state of the system and satisfies the conditions for classical objectivity to be established. The second environment, which we dub as inaccessible, affects the system in two physically relevant ways. Firstly, we consider an interaction that commutes with the Hamiltonian describing the interaction between system and accessible bath. It thus also gives rise to dephasing of the system, albeit on different time scales. Secondly, we consider a thermalising interaction, which does not commute with the system-accessible environment Hamiltonian. While the former still allows the system to redundantly encode its state into the accessible environment, the latter degrades the correlations, eventually destroying them in the long-time limit, and thus leads to a loss of the conditions necessary for classical objectivity to be established. This sheds light on the role that commutativity between the various system-bath interaction terms plays when establishing the conditions for classical objectivity to be supported

The common feeder cockroach Blaptica dubia shows increased transmission distance based on mode of acquisition of environmental bacteria

Although some researchers claim that cockroaches are masters of disease transmission, these claims have little to no scientific support. Most studies concerning cockroaches as a vector of disease only focus on the bacteria found on the body surface, not on whether cockroaches have actually transferred pathogenic bacteria via surface contact. We set out to determine if cockroaches would act as a mechanical vector for the transfer of the opportunistic pathogen, E. coli. Roaches were contaminated with Green fluorescent protein expressing E. coli (GFP-E.coli) broth by either walking the roach through a broth culture or by complete immersion in the culture.. We then ran the roaches down a sterile agar track and measured the length of the glowing trail. Roaches were able to transmit E.coli, but only for a continuous distance of less than 50 cm, with the occasional sporadic colony growing after that. Roaches that were immersed in bacterial broth tracked the bacterium further than those that only walked through the solution. This suggests that while cockroaches are capable of acting as a mechanical vector, they are not capable of transporting transient flora over long distances. Future studies should explore this mechanism

Low State, Phase-Resolved IR Spectroscopy of VV Puppis

We present phase-resolved low resolution $JHK$ and higher resolution $K$-band spectroscopy of the polar VV Pup. All observations were obtained when VV Pup was in a low accretion state having a K magnitude near 15. The low resolution observations reveal cyclotron emission in the $J$ band during some phases, consistent with an origin near the active 30.5 MG pole on the white dwarf. The secondary in VV Pup appears to be a normal M7V star and we find that the $H$ and $K$ band fluxes are entirely due to this star at all orbital phases during the low accretion state. We use our higher resolution Keck spectroscopy to produce the first $K$-band radial velocity curve for VV Pup. Our orbital solution yields $K_2$=414$\pm27$ km sec$^{-1}$ and leads to mass estimates of M$_1$=0.73$\pm$0.05 M$_{\odot}$ and M$_2$=0.10$\pm$0.02 M$_{\odot}$. We find that the mass accretion rates during the normal low states of the polars VV Pup, EF Eri, and EQ Cet are near 10$^{-13}$ M$_{\odot}$ yr$^{-1}$. The fact that \.M is not zero in low state polars indicates active secondary stars in these binary systems, including the sub-stellar donor star present in EF Eri.Comment: Accepted in Astronomical Journal 5 figure

An Alternative Pathway for Okazaki Fragment Processing - Resolution of Fold-Back Flaps by Pif1 Helicase

Two pathways have been proposed for eukaryotic Okazaki fragment RNA primer removal. Results presented here provide evidence for an alternative pathway. Primer extension by DNA polymerase δ (pol δ) displaces the downstream fragment into an RNA-initiated flap. Most flaps are cleaved by flap endonuclease 1 (FEN1) while short, and the remaining nicks joined in the first pathway. A small fraction escapes immediate FEN1 cleavage and is further lengthened by Pif1 helicase. Long flaps are bound by replication protein A (RPA), which inhibits FEN1. In the second pathway, Dna2 nuclease cleaves an RPA-bound flap and displaces RPA, leaving a short flap for FEN1. Pif1 flap lengthening creates a requirement for Dna2. This relationship should not have evolved unless Pif1 had an important role in fragment processing. In this study, biochemical reconstitution experiments were used to gain insight into this role. Pif1 did not promote synthesis through GC-rich sequences, which impede strand displacement. Pif1 was also unable to open fold-back flaps that are immune to cleavage by either FEN1 or Dna2 and cannot be bound by RPA. However, Pif1 working with pol δ readily unwound a full-length Okazaki fragment initiated by a fold-back flap. Additionally, a fold-back in the template slowed pol δ synthesis, so that the fragment could be removed before ligation to the lagging strand. These results suggest an alternative pathway in which Pif1 removes Okazaki fragments initiated by fold-back flaps in vivo