Towards a standard framework to describe behaviours in the common-sloth (Bradypus variegatus Schinz, 1825): novel interactions data observed in distinct fragments of the Atlantic forest, Brazil

The common three-toed sloth is a widespread species, but the location and the observation of its individuals are greatly hindered by its biological features. Their camouflaged pelage, its slow and quiet movements, and the strictly arboreal habits resulted in the publication of sparse, fragmented and not patterned information on the common sloth behaviour. Thus, herein we propose an updated standardized behavioural categories' framework to the study of the species. Furthermore we describe two never reported interaction behaviours: a probable mating / courtship ritual between male and female; and apparent recognition behaviour between two males. Finally we highlight the contribution of small-duration field works in this elusive species ethological study

Towards a standard framework to describe behaviours in the common-sloth (Bradypus variegatus Schinz, 1825): novel interactions data observed in distinct fragments of the Atlantic forest, Brazil

The common three-toed sloth is a widespread species, but the location and the observation of its individuals are greatly hindered by its biological features. Their camouflaged pelage, its slow and quiet movements, and the strictly arboreal habits resulted in the publication of sparse, fragmented and not patterned information on the common sloth behaviour. Thus, herein we propose an updated standardized behavioural categories' framework to the study of the species. Furthermore we describe two never reported interaction behaviours: a probable mating / courtship ritual between male and female; and apparent recognition behaviour between two males. Finally we highlight the contribution of small-duration field works in this elusive species ethological study

Next-generation genotyping of hypervariable loci in many individuals of a non-model species: technical and theoretical implications

BACKGROUND: Across species, diversity at the Major Histocompatibility Complex (MHC) is critical to disease resistance and population health; however, use of MHC diversity to quantify the genetic health of populations has been hampered by the extreme variation found in MHC genes. Next generation sequencing (NGS) technology generates sufficient data to genotype even the most diverse species, but workflows for distinguishing artifacts from alleles are still under development. We used NGS to evaluate the MHC diversity of over 300 captive and wild ring-tailed lemurs (Lemur catta: Primates: Mammalia). We modified a published workflow to address errors that arise from deep sequencing individuals and tested for evidence of selection at the most diverse MHC genes. RESULTS: In addition to evaluating the accuracy of 454 Titanium and Ion Torrent PGM for genotyping large populations at hypervariable genes, we suggested modifications to improve current methods of allele calling. Using these modifications, we genotyped 302 out of 319 individuals, obtaining an average sequencing depth of over 1000 reads per amplicon. We identified 55 MHC-DRB alleles, 51 of which were previously undescribed, and provide the first sequences of five additional MHC genes: DOA, DOB, DPA, DQA, and DRA. The additional five MHC genes had one or two alleles each with little sequence variation; however, the 55 MHC-DRB alleles showed a high dN/dS ratio and trans-species polymorphism, indicating a history of positive selection. Because each individual possessed 1–7 MHC-DRB alleles, we suggest that ring-tailed lemurs have four, putatively functional, MHC-DRB copies. CONCLUSIONS: In the future, accurate genotyping methods for NGS data will be critical to assessing genetic variation in non-model species. We recommend that future NGS studies increase the proportion of replicated samples, both within and across platforms, particularly for hypervariable genes like the MHC. Quantifying MHC diversity within non-model species is the first step to assessing the relationship of genetic diversity at functional loci to individual fitness and population viability. Owing to MHC-DRB diversity and copy number, ring-tailed lemurs may serve as an ideal model for estimating the interaction between genetic diversity, fitness, and environment, especially regarding endangered species. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12864-016-2503-y) contains supplementary material, which is available to authorized users