471 research outputs found
Rapid planetesimal formation in turbulent circumstellar discs
The initial stages of planet formation in circumstellar gas discs proceed via
dust grains that collide and build up larger and larger bodies (Safronov 1969).
How this process continues from metre-sized boulders to kilometre-scale
planetesimals is a major unsolved problem (Dominik et al. 2007): boulders stick
together poorly (Benz 2000), and spiral into the protostar in a few hundred
orbits due to a head wind from the slower rotating gas (Weidenschilling 1977).
Gravitational collapse of the solid component has been suggested to overcome
this barrier (Safronov 1969, Goldreich & Ward 1973, Youdin & Shu 2002). Even
low levels of turbulence, however, inhibit sedimentation of solids to a
sufficiently dense midplane layer (Weidenschilling & Cuzzi 1993, Dominik et al.
2007), but turbulence must be present to explain observed gas accretion in
protostellar discs (Hartmann 1998). Here we report the discovery of efficient
gravitational collapse of boulders in locally overdense regions in the
midplane. The boulders concentrate initially in transient high pressures in the
turbulent gas (Johansen, Klahr, & Henning 2006), and these concentrations are
augmented a further order of magnitude by a streaming instability (Youdin &
Goodman 2005, Johansen, Henning, & Klahr 2006, Johansen & Youdin 2007) driven
by the relative flow of gas and solids. We find that gravitationally bound
clusters form with masses comparable to dwarf planets and containing a
distribution of boulder sizes. Gravitational collapse happens much faster than
radial drift, offering a possible path to planetesimal formation in accreting
circumstellar discs.Comment: To appear in Nature (30 August 2007 issue). 18 pages (in referee
mode), 3 figures. Supplementary Information can be found at 0708.389
Basolateral Sorting of Syntaxin 4 Is Dependent on Its N-terminal Domain and the AP1B Clathrin Adaptor, and Required for the Epithelial Cell Polarity
Generation of epithelial cell polarity requires mechanisms to sort plasma membrane proteins to the apical and basolateral domains. Sorting involves incorporation into specific vesicular carriers and subsequent fusion to the correct target membranes mediated by specific SNARE proteins. In polarized epithelial cells, the SNARE protein syntaxin 4 localizes exclusively to the basolateral plasma membrane and plays an important role in basolateral trafficking pathways. However, the mechanism of basolateral targeting of syntaxin 4 itself has remained poorly understood. Here we show that newly synthesized syntaxin 4 is directly targeted to the basolateral plasma membrane in polarized Madin-Darby canine kidney (MDCK) cells. Basolateral targeting depends on a signal that is centered around residues 24–29 in the N-terminal domain of syntaxin 4. Furthermore, basolateral targeting of syntaxin 4 is dependent on the epithelial cell-specific clathrin adaptor AP1B. Disruption of the basolateral targeting signal of syntaxin 4 leads to non-polarized delivery to both the apical and basolateral surface, as well as partial intercellular retention in the trans-Golgi network. Importantly, disruption of the basolateral targeting signal of syntaxin 4 leads to the inability of MDCK cells to establish a polarized morphology which suggests that restriction of syntaxin 4 to the basolateral domain is required for epithelial cell polarity
Improving the sensitivity of Higgs boson searches in the golden channel
Leptonic decays of the Higgs boson in the ZZ* channel yield what is known as
the golden channel due to its clean signature and good total invariant mass
resolution. In addition, the full kinematic distribution of the decay products
can be reconstructed, which, nonetheless, is not taken into account in
traditional search strategy relying only on measurements of the total invariant
mass. In this work we implement a type of multivariate analysis known as the
matrix element method, which exploits differences in the full production and
decay matrix elements between the Higgs boson and the dominant irreducible
background from q bar{q} -> ZZ*. Analytic expressions of the differential
distributions for both the signal and the background are also presented. We
perform a study for the Large Hadron Collider at sqrt{s}=7 TeV for Higgs masses
between 175 and 350 GeV. We find that, with an integrated luminosity of 2.5
fb^-1 or higher, improvements in the order of 10 - 20 % could be obtained for
both discovery significance and exclusion limits in the high mass region, where
the differences in the angular correlations between signal and background are
most pronounced.Comment: 31 pages, 8 figures. v2: Minus signs in definitions of angles
corrected. Typos fixed. Reference added. Cosmetic changes to Figure 4.
Additional sentence added for clarificatio
Turbulence and galactic structure
Interstellar turbulence is driven over a wide range of scales by processes
including spiral arm instabilities and supernovae, and it affects the rate and
morphology of star formation, energy dissipation, and angular momentum transfer
in galaxy disks. Star formation is initiated on large scales by gravitational
instabilities which control the overall rate through the long dynamical time
corresponding to the average ISM density. Stars form at much higher densities
than average, however, and at much faster rates locally, so the slow average
rate arises because the fraction of the gas mass that forms stars at any one
time is low, ~10^{-4}. This low fraction is determined by turbulence
compression, and is apparently independent of specific cloud formation
processes which all operate at lower densities. Turbulence compression also
accounts for the formation of most stars in clusters, along with the cluster
mass spectrum, and it gives a hierarchical distribution to the positions of
these clusters and to star-forming regions in general. Turbulent motions appear
to be very fast in irregular galaxies at high redshift, possibly having speeds
equal to several tenths of the rotation speed in view of the morphology of
chain galaxies and their face-on counterparts. The origin of this turbulence is
not evident, but some of it could come from accretion onto the disk. Such high
turbulence could help drive an early epoch of gas inflow through viscous
torques in galaxies where spiral arms and bars are weak. Such evolution may
lead to bulge or bar formation, or to bar re-formation if a previous bar
dissolved. We show evidence that the bar fraction is about constant with
redshift out to z~1, and model the formation and destruction rates of bars
required to achieve this constancy.Comment: in: Penetrating Bars through Masks of Cosmic Dust: The Hubble Tuning
Fork strikes a New Note, Eds., K. Freeman, D. Block, I. Puerari, R. Groess,
Dordrecht: Kluwer, in press (presented at a conference in South Africa, June
7-12, 2004). 19 pgs, 5 figure
Interleukin-1β sequesters hypoxia inducible factor 2α to the primary cilium.
BACKGROUND: The primary cilium coordinates signalling in development, health and disease. Previously we have shown that the cilium is essential for the anabolic response to loading and the inflammatory response to interleukin-1β (IL-1β). We have also shown the primary cilium elongates in response to IL-1β exposure. Both anabolic phenotype and inflammatory pathology are proposed to be dependent on hypoxia-inducible factor 2 alpha (HIF-2α). The present study tests the hypothesis that an association exists between the primary cilium and HIFs in inflammatory signalling. RESULTS: Here we show, in articular chondrocytes, that IL-1β-induces primary cilia elongation with alterations to cilia trafficking of arl13b. This elongation is associated with a transient increase in HIF-2α expression and accumulation in the primary cilium. Prolyl hydroxylase inhibition results in primary cilia elongation also associated with accumulation of HIF-2α in the ciliary base and axoneme. This recruitment and the associated cilia elongation is not inhibited by blockade of HIFα transcription activity or rescue of basal HIF-2α expression. Hypomorphic mutation to intraflagellar transport protein IFT88 results in limited ciliogenesis. This is associated with increased HIF-2α expression and inhibited response to prolyl hydroxylase inhibition. CONCLUSIONS: These findings suggest that ciliary sequestration of HIF-2α provides negative regulation of HIF-2α expression and potentially activity. This study indicates, for the first time, that the primary cilium regulates HIF signalling during inflammation
Comparative proteomic analysis of metabolically labelled proteins from Plasmodium falciparum isolates with different adhesion properties
The virulence of Plasmodium falciparum relates in part to the cytoadhesion characteristics of parasitized erythrocytes but the molecular basis of the different qualitative and quantitative binding phenotypes is incompletely understood. This paucity of information is due partly to the difficulty in working with membrane proteins, the variant nature of these surface antigens and their relatively low abundance. To address this two-dimensional (2D) protein profiles of closely related, but phenotypically different laboratory strains of P. falciparum have been characterized using proteomic approaches. Since the mature erythrocyte has no nucleus and no protein synthesis capability, metabolic labelling of proteins was used to selectively identify parasite proteins and increase detection sensitivity. A small number of changes (less than 10) were observed between four different P. falciparum laboratory strains with distinctive cytoadherence properties using metabolic labelling, with more parasite protein changes found in trophozoite iRBCs than ring stage. The combination of metabolic labelling and autoradiography can therefore be used to identify parasite protein differences, including quantitative ones, and in some cases to obtain protein identifications by mass spectrometry. The results support the suggestion that the membrane protein profile may be related to cytoadherent properties of the iRBCs. Most changes between parasite variants were differences in iso-electric point indicating differential protein modification rather than the presence or absence of a specific peptide
Magnetic support of the optical emission line filaments in NGC 1275
The giant elliptical galaxy NGC 1275, at the centre of the Perseus cluster,
is surrounded by a well-known giant nebulosity of emission-line filaments,
which are plausibly about >10^8 yr old. The filaments are dragged out from the
centre of the galaxy by the radio bubbles rising buoyantly in the hot
intracluster gas before later falling back. They act as dramatic markers of the
feedback process by which energy is transferred from the central massive black
hole to the surrounding gas. The mechanism by which the filaments are
stabilized against tidal shear and dissipation into the surrounding 4x10^7 K
gas has been unclear. Here we report new observations that resolve thread-like
structures in the filaments. Some threads extend over 6 kpc, yet are only 70 pc
wide. We conclude that magnetic fields in the threads, in pressure balance with
the surrounding gas, stabilize the filaments, so allowing a large mass of cold
gas to accumulate and delay star formation.Comment: Published in Nature, includes supplementary information, high
resolution images available at http://www-xray.ast.cam.ac.uk/papers/ngc1275
Leptin Activates Anorexigenic POMC Neurons through a Neural Network in the Arcuate Nucleus
The administration of leptin to leptin-deficient humans, and the analogous Lepob/Lepob mice, effectively reduces hyperphagia and obesity. But common obesity is associated with elevated leptin, which suggests that obese humans are resistant to this adipocyte hormone. In addition to regulating long-term energy balance, leptin also rapidly affects neuronal activity. Proopiomelanocortin (POMC) and neuropeptide-Y types of neurons in the arcuate nucleus of the hypothalamus7 are both principal sites of leptin receptor expression and the source of potent neuropeptide modulators, melanocortins and neuropeptide Y, which exert opposing effects on feeding and metabolism. These neurons are therefore ideal for characterizing leptin action and the mechanism of leptin resistance; however, their diffuse distribution makes them difficult to study. Here we report electrophysiological recordings on POMC neurons, which we identified by targeted expression of green fluorescent protein in transgenic mice. Leptin increases the frequency of action potentials in the anorexigenic POMC neurons by two mechanisms: depolarization through a nonspecific cation channel; and reduced inhibition by local orexigenic neuropeptide-Y/GABA (g-aminobutyric acid) neurons. Furthermore, we show that melanocortin peptides have an autoinhibitory effect on this circuit. On the basis of our results, we propose an integrated model of leptin action and neuronal architecture in the arcuate nucleus of the hypothalamu
Quantitative and Qualitative Analysis of the Antifungal Activity of Allicin Alone and in Combination with Antifungal Drugs
The antifungal activity of allicin and its synergistic effects with the antifungal agents flucytosine and amphotericin B (AmB) were investigated in Candida albicans (C. albicans). C. albicans was treated with different conditions of compounds alone and in combination (allicin, AmB, flucytosine, allicin + AmB, allicin + flucytosine, allicin + AmB + flucytosine). After a 24-hour treatment, cells were examined by scanning electron microscopy (SEM) and atomic force microscopy (AFM) to measure morphological and biophysical properties associated with cell death. The clearing assay was conducted to confirm the effects of allicin. The viability of C. albicans treated by allicin alone or with one antifungal drug (AmB, flucytosine) in addition was more than 40% after a 24-hr treatment, but the viability of groups treated with combinations of more than two drugs was less than 32%. When the cells were treated with allicin alone or one type of drug, the morphology of the cells did not change noticeably, but when cells were treated with combinations of drugs, there were noticeable morphological changes. In particular, cells treated with allicin + AmB had significant membrane damage (burst or collapsed membranes). Classification of cells according to their cell death phase (CDP) allowed us to determine the relationship between cell viability and treatment conditions in detail. The adhesive force was decreased by the treatment in all groups compare to the control. Cells treated with AmB + allicin had a greater adhesive force than cells treated with AmB alone because of the secretion of molecules due to collapsed membranes. All cells treated with allicin or drugs were softer than the control cells. These results suggest that allicin can reduce MIC of AmB while keeping the same efficacy
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