13 research outputs found

    Bio-click chemistry: a bridge between biocatalysis and click chemistry

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    This review summarizes chemo/biocatalytic syntheses that combine the highly efficient click chemistry reactions with the advantages of biocatalysis. The concept of bio-click chemistry and its implications are introduced in this review.</jats:p

    Variação diurna de parâmetros de função pulmonar e de força muscular respiratória em pacientes com DPOC Diurnal variations in the parameters of pulmonary function and respiratory muscle strength in patients with COPD

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    OBJETIVO: Avaliar a magnitude de mudanças diurnas em parâmetros de função pulmonar e de força e resistência dos músculos respiratórios em uma amostra de pacientes com DPOC. MÉTODOS: Um grupo com 7 pacientes foi submetido a espirometria e a determinação de PImáx e PEmáx em dois momentos (entre 8h00 e 8h30 e entre 16h30 e 17h00) em um único dia. Os pacientes permaneceram em repouso na área do laboratório entre as avaliações. RESULTADOS: De acordo com o sistema de estadiamento da Global Initiative for Chronic Obstructive Pulmonary Disease, a doença foi classificada em moderada, grave e muito grave em 1, 3 e 3 pacientes, respectivamente. Da primeira para a segunda avaliação, houve uma queda significativa em CVF, VEF1 e PEmáx (de 13%, 15% e 10%, respectivamente), bem como uma queda não significativa em PFE, PImáx e ventilação voluntária máxima (de 9%, 3% e 11%, respectivamente). CONCLUSÕES: Nesta amostra de pacientes com DPOC, houve variações diurnas nos parâmetros de função pulmonar e de força de músculos respiratórios. Os valores de VEF1, CVF e PEmáx foram significativamente menores à tarde do que de manhã.<br>OBJECTIVE: To evaluate the magnitude of diurnal changes in the parameters of pulmonary function and respiratory muscle strength/endurance in a sample of patients with COPD. METHODS: A group of 7 patients underwent spirometry, together with determination of MIP and MEP, at two distinct times (between 8:00 and 8:30 a.m. and between 4:30 and 5:00 p.m.) on a single day. Between assessments, the patients remained at rest in the laboratory. RESULTS: In accordance with the Global Initiative for Chronic Obstructive Pulmonary Disease staging system, COPD was classified as moderate, severe, and very severe in 1, 3, and 3 of the patients, respectively. From the first to the second assessment, there were significant decreases in FVC, FEV1, and MEP (of 13%, 15%, and 10%, respectively), as well as (less than significant) decreases in PEF, MIP, and maximal voluntary ventilation (of 9%, 3%, and 11%, respectively). CONCLUSIONS: In this sample of COPD patients, there were diurnal variations in the parameters of pulmonary function and respiratory muscle strength. The values of FEV1, FVC, and MEP were significantly lower in the afternoon than in the morning

    Relevance of the ancestry for the variability of the Drug-Metabolizing Enzymes CYP2C9, CYP2C19 and CYP2D6 polymorphisms in a multiethnic Costa Rican population

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    CYP2C9, CYP2C19 and CYP2D6 metabolize around 40 % of drugs and their genes vary across populations. The Costa Rican population has a trihybrid ancestry and its key geographic location turns it into a suitable scenario to evaluate interethnic differences across populations. This study aims to describe the diversity of CYP2C9, CYP2C19 and CYP2D6 polymorphisms in Costa Rican populations in the context of their ancestry. A total of 448 healthy individuals were included in the study: Bribri (n= 47), Cabécar (n= 27), Maleku (n= 16), Guaymí (n= 30), Huetar (n= 48), Chorotega (n= 41), Admixed/Mestizos from the Central Valley/Guanacaste (n= 189), and Afro-Caribbeans (n= 50) from Limón. CYP2C9 (alleles *2, *3, *6) and CYP2C19 (*2, *3, *4, *5, *17) genotypes were determined by Real-Time PCR. African, European and Native American ancestry were inferred using 87 ancestry informative markers. The frequency of the decreased activity allele CYP2C9*2 is lower in the self-reported Amerindian groups compared to the admixed population, and the highest frequencies of CYP2C19*2 (null activity) and the CYP2C19*17 (increased activity) were found in the self-reported Afro- Caribbean population. Moreover, a frequency of 0.7 % CYP2C9 gPMs in the Admixed population and a variable frequency of CYP2C19 gUMs (0.0-32.6 %, more prevalent in Afro-Caribbeans) in Costa Rican populations, was found. Finally, the following alleles were positively correlated with genomic African ancestry and negatively correlated with genomic Native American ancestry: CYP2D6*5 (null activity), CYP2D6*17 (decreased activity), CYP2D6*29 (decreased activity) and CYP2C19*17 (increased activity). No correlation for CYP2C9 polymorphisms and genomic ancestry was found. Further studies assessing the CYP2C9 and CYP2C19 sequence in these populations, preferentially by sequencing these genes, are warranted

    SMOG 2: A Versatile Software Package for Generating Structure-Based Models

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    Molecular dynamics simulations with coarse-grained or simplified Hamiltonians have proven to be an effective means of capturing the functionally important long-time and large-length scale motions of proteins and RNAs. Originally developed in the context of protein folding, structure-based models (SBMs) have since been extended to probe a diverse range of biomolecular processes, spanning from protein and RNA folding to functional transitions in molecular machines. The hallmark feature of a structure-based model is that part, or all, of the potential energy function is defined by a known structure. Within this general class of models, there exist many possible variations in resolution and energetic composition. SMOG 2 is a downloadable software package that reads user-designated structural information and user-defined energy definitions, in order to produce the files necessary to use SBMs with high performance molecular dynamics packages: GROMACS and NAMD. SMOG 2 is bundled with XML-formatted template files that define commonly used SBMs, and it can process template files that are altered according to the needs of each user. This computational infrastructure also allows for experimental or bioinformatics-derived restraints or novel structural features to be included, e.g. novel ligands, prosthetic groups and post-translational/transcriptional modifications. The code and user guide can be downloaded at http://smog-server.org/smog2

    Worlding resilience in the Doña Juana Volcano-Páramo, Northern Andes (Colombia): A transdisciplinary view

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    Cold survival strategies for bacteria, recent advancement and potential industrial applications

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