Some resonances between Eastern thought and Integral Biomathics in the framework of the WLIMES formalism for modelling living systems

Forty-two years ago, Capra published “The Tao of Physics” (Capra, 1975). In this book (page 17) he writes: “The exploration of the atomic and subatomic world in the twentieth century has …. necessitated a radical revision of many of our basic concepts” and that, unlike ‘classical’ physics, the sub-atomic and quantum “modern physics” shows resonances with Eastern thoughts and “leads us to a view of the world which is very similar to the views held by mystics of all ages and traditions.“ This article stresses an analogous situation in biology with respect to a new theoretical approach for studying living systems, Integral Biomathics (IB), which also exhibits some resonances with Eastern thought. Stepping on earlier research in cybernetics1 and theoretical biology,2 IB has been developed since 2011 by over 100 scientists from a number of disciplines who have been exploring a substantial set of theoretical frameworks. From that effort, the need for a robust core model utilizing advanced mathematics and computation adequate for understanding the behavior of organisms as dynamic wholes was identified. At this end, the authors of this article have proposed WLIMES (Ehresmann and Simeonov, 2012), a formal theory for modeling living systems integrating both the Memory Evolutive Systems (Ehresmann and Vanbremeersch, 2007) and the Wandering Logic Intelligence (Simeonov, 2002b). Its principles will be recalled here with respect to their resonances to Eastern thought

A Simple Geometric Representative for μ\mu of a Point

For $SU(2)$ (or $SO(3)$) Donaldson theory on a 4-manifold $X$, we construct a simple geometric representative for $\mu$ of a point. Let $p$ be a generic point in $X$. Then the set $\{ [A] | F_A^-(p)$ is reducible $\}$, with coefficient -1/4 and appropriate orientation, is our desired geometric representative.Comment: Updated 2018 to published version. 8 pages, AmS-TeX, no figure

Discrete Formulation for the dynamics of rods deforming in space

We describe the main ingredients needed to create, from the smooth lagrangian density, a variational principle for discrete motions of a discrete rod, with corresponding conserved Noether currents. We describe all geometrical objects in terms of elements on the linear Atiyah bundle, using a reduced forward difference operator. We show how this introduces a discrete lagrangian density that models the discrete dynamics of a discrete rod. The presented tools are general enough to represent a discretization of any variational theory in principal bundles, and its simplicity allows to perform an iterative integration algorithm to compute the discrete rod evolution in time, starting from any predefined configurations of all discrete rod elements at initial times

Infinitesimals without Logic

We introduce the ring of Fermat reals, an extension of the real field containing nilpotent infinitesimals. The construction takes inspiration from Smooth Infinitesimal Analysis (SIA), but provides a powerful theory of actual infinitesimals without any need of a background in mathematical logic. In particular, on the contrary with respect to SIA, which admits models only in intuitionistic logic, the theory of Fermat reals is consistent with classical logic. We face the problem to decide if the product of powers of nilpotent infinitesimals is zero or not, the identity principle for polynomials, the definition and properties of the total order relation. The construction is highly constructive, and every Fermat real admits a clear and order preserving geometrical representation. Using nilpotent infinitesimals, every smooth functions becomes a polynomial because in Taylor's formulas the rest is now zero. Finally, we present several applications to informal classical calculations used in Physics: now all these calculations become rigorous and, at the same time, formally equal to the informal ones. In particular, an interesting rigorous deduction of the wave equation is given, that clarifies how to formalize the approximations tied with Hook's law using this language of nilpotent infinitesimals.Comment: The first part of the preprint is taken directly form arXiv:0907.1872 The second part is new and contains a list of example

Dependence of the Martian radiation environment on atmospheric depth: Modeling and measurement

The energetic particle environment on the Martian surface is influenced by solar and heliospheric modulation and changes in the local atmospheric pressure (or column depth). The Radiation Assessment Detector (RAD) on board the Mars Science Laboratory rover Curiosity on the surface of Mars has been measuring this effect for over four Earth years (about two Martian years). The anticorrelation between the recorded surface Galactic Cosmic Ray-induced dose rates and pressure changes has been investigated by Rafkin et al. (2014) and the long-term solar modulation has also been empirically analyzed and modeled by Guo et al. (2015). This paper employs the newly updated HZETRN2015 code to model the Martian atmospheric shielding effect on the accumulated dose rates and the change of this effect under different solar modulation and atmospheric conditions. The modeled results are compared with the most up-to-date (from 14 August 2012 to 29 June 2016) observations of the RAD instrument on the surface of Mars. Both model and measurements agree reasonably well and show the atmospheric shielding effect under weak solar modulation conditions and the decline of this effect as solar modulation becomes stronger. This result is important for better risk estimations of future human explorations to Mars under different heliospheric and Martian atmospheric conditions

MacDowell-Mansouri gravity and Cartan geometry

The geometric content of the MacDowell-Mansouri formulation of general relativity is best understood in terms of Cartan geometry. In particular, Cartan geometry gives clear geometric meaning to the MacDowell-Mansouri trick of combining the Levi-Civita connection and coframe field, or soldering form, into a single physical field. The Cartan perspective allows us to view physical spacetime as tangentially approximated by an arbitrary homogeneous "model spacetime", including not only the flat Minkowski model, as is implicitly used in standard general relativity, but also de Sitter, anti de Sitter, or other models. A "Cartan connection" gives a prescription for parallel transport from one "tangent model spacetime" to another, along any path, giving a natural interpretation of the MacDowell-Mansouri connection as "rolling" the model spacetime along physical spacetime. I explain Cartan geometry, and "Cartan gauge theory", in which the gauge field is replaced by a Cartan connection. In particular, I discuss MacDowell-Mansouri gravity, as well as its more recent reformulation in terms of BF theory, in the context of Cartan geometry.Comment: 34 pages, 5 figures. v2: many clarifications, typos correcte

Parallel Transport over Path Spaces

We develop a differential geometric framework for parallel transport over path spaces and a corresponding discrete theory, an integrated version of the continuum theory, using a category-theoretic framework.Comment: 27pp 3fig pdflatex only; v2: rewritten with several clarifications; v3: minor changes, added references. Version to be published, 30p

Singular open book structures from real mappings

We prove extensions of Milnor's theorem for germs with nonisolated singularity and use them to find new classes of genuine real analytic mappings $\psi$ with positive dimensional singular locus \Sing \psi \subset \psi^{-1}(0), for which the Milnor fibration exists and yields an open book structure with singular binding.Comment: more remark