15N NMR study of a mixture of uniformly labeled tRNAs

15N NMR spectra were taken of 15N-enriched tRNA extracted from bakers yeast; ammonium sulfate was used as a nitrogen source. The increase in the degree of denaturation of tRNA, which occurs with increase in temperature from 30 degrees C to 70 degrees C, resulted in no large changes in 15N chemical shifts at acidic and neutral pH but quite pronounced changes in proton-15N nuclear Overhauser effects

Cavitation inception of a van der Waals fluid at a sack-wall obstacle

Cavitation in a liquid moving past a constraint is numerically investigated by means of a free-energy lattice Boltzmann simulation based on the van der Waals equation of state. The fluid is streamed past an obstacle and, depending on the pressure drop between inlet and outlet, vapor formation underneath the corner of the sack-wall is observed. The circumstances of cavitation formation are investigated and it is found that the local bulk pressure and mean stress are insufficient to explain the phenomenon. Results obtained in this study strongly suggest that the viscous stress, interfacial contributions to the local pressure, and the Laplace pressure are relevant to the opening of a vapor cavity. This can be described by a generalization of Joseph's criterion that includes these contributions. A macroscopic investigation measuring mass flow rate behavior and discharge coefficient was also performed. As theoretically predicted, mass flow rate increases linearly with the square root of the pressure drop. However, when cavitation occurs, the mass flow growth rate is reduced and eventually it collapses into a choked flow state. In the cavitating regime, as theoretically predicted and experimentally verified, the discharge coefficient grows with the Nurick cavitation number

Effects of an external drive on the fluctuation-dissipation relation of phase-ordering systems

The relation between the autocorrelation $C(t,t_w)$ and the integrated linear response function $\chi(t,t_w)$ is studied in the context of the large-N model for phase-ordering systems subjected to a shear flow. In the high temperature phase $T>T_c$ a non-equilibrium stationary state is entered which is characterized by a non-trivial fluctuation-dissipation relation $\chi (t-t_w)=\tilde \chi(C(t-t_w))$. For quenches below $T_c$ the splitting of the order parameter field into two statistically independent components, responsible for the stationary $C^{st}(t-t_w)$ and aging $C^{ag}(t/t_w)$ part of the autocorrelation function, can be explicitly exhibited in close analogy with the undriven case. In the regime $t-t_w\ll t_w$ the same relation $\chi (t-t_w)=\tilde \chi (C^{st}(t-t_w))$ is found between the response and $C^{st}(t-t_w)$, as for $T>T_c$ . The aging part of $\chi (t,t_w)$ is negligible for $t_w\to \infty$, as without drive, resulting in a flat $\chi (C)$ in the aging regime $t-t_w\gg t_w$.Comment: 8 pages, 2 figure

Thermocurrents and their Role in high Q Cavity Performance

Over the past years it became evident that the quality factor of a superconducting cavity is not only determined by its surface preparation procedure, but is also influenced by the way the cavity is cooled down. Moreover, different data sets exists, some of them indicate that a slow cool-down through the critical temperature is favourable while other data states the exact opposite. Even so there where speculations and some models about the role of thermo-currents and flux-pinning, the difference in behaviour remained a mystery. In this paper we will for the first time present a consistent theoretical model which we confirmed by data that describes the role of thermo-currents, driven by temperature gradients and material transitions. We will clearly show how they impact the quality factor of a cavity, discuss our findings, relate it to findings at other labs and develop mitigation strategies which especially addresses the issue of achieving high quality factors of so-called nitrogen doped cavities in horizontal test

Hadamard States and Adiabatic Vacua

Reversing a slight detrimental effect of the mailer related to TeXabilityComment: 10pages, LaTeX (RevTeX-preprint style

Ordering of the lamellar phase under a shear flow

The dynamics of a system quenched into a state with lamellar order and subject to an uniform shear flow is solved in the large-N limit. The description is based on the Brazovskii free-energy and the evolution follows a convection-diffusion equation. Lamellae order preferentially with the normal along the vorticity direction. Typical lengths grow as $\gamma t^{5/4}$ (with logarithmic corrections) in the flow direction and logarithmically in the shear direction. Dynamical scaling holds in the two-dimensional case while it is violated in D=3

Folding transitions of the triangular lattice with defects

A recently introduced model describing the folding of the triangular lattice is generalized allowing for defects in the lattice and written as an Ising model with nearest-neighbor and plaquette interactions on the honeycomb lattice. Its phase diagram is determined in the hexagon approximation of the cluster variation method and the crossover from the pure Ising to the pure folding model is investigated, obtaining a quite rich structure with several multicritical points. Our results are in very good agreement with the available exact ones and extend a previous transfer matrix study.Comment: 16 pages, latex, 5 postscript figure

Anisotropic dynamical scaling in a spin model with competing interactions

Results are presented for the kinetics of domain growth of a two-dimensional Ising spin model with competing interactions quenched from a disordered to a striped phase. The domain growth exponent are $\beta=1/2$ and $\beta=1/3$ for single-spin-flip and spin-exchange dynamics, as found in previous simulations. However the correlation functions measured in the direction parallel and transversal to the stripes are different as suggested by the existence of different interface energies between the ground states of the model. In the case of single-spin-flip dynamics an anisotropic version of the Ohta-Jasnow-Kawasaki theory for the pair scaling function can be used to fit our data.Comment: 4 pages, REVTeX fil

Two-scale competition in phase separation with shear

The behavior of a phase separating binary mixture in uniform shear flow is investigated by numerical simulations and in a renormalization group (RG) approach. Results show the simultaneous existence of domains of two characteristic scales. Stretching and cooperative ruptures of the network produce a rich interplay where the recurrent prevalence of thick and thin domains determines log-time periodic oscillations. A power law growth $R(t) \sim t^{\alpha}$ of the average domain size, with $\alpha =4/3$ and $\alpha = 1/3$ in the flow and shear direction respectively, is shown to be obeyed.Comment: 5 Revtex pages, 4 figure

Hashimotos’ thyroiditis: Epidemiology, pathogenesis, clinic and therapy

Hashimoto's thyroiditis (HT), the most frequent autoimmune thyroid disorders (AITDs), is the leading cause of hypothyroidism in the iodine-sufficient areas of the world. About 20-30% of patients suffers from HT, whose cause is thought to be a combination of genetic susceptibility and environmental factors that causes the loss of immunological tolerance, with a consequent autoimmune attack to the thyroid tissue and appearance of the disease. The pathologic features of lymphocytic infiltration, especially of T cells, and follicular destruction are the histological hallmark of autoimmune thyroiditis (AIT), that lead to gradual atrophy and fibrosis. An important role in the immune-pathogenesis of AITDs is due to chemokines and cytokines. In about 20% of patients, AITDs are associated with other organ specific/systemic autoimmune disorders. Many studies have demonstrated the relationship between papillary thyroid cancer and AITD. The treatment of hypothyroidism, as result of AIT, consists in daily assumption of synthetic levothyroxine