Three-dimensional images of choanoflagellate loricae

Choanoflagellates are unicellular filter-feeding protozoa distributed universally in aquatic habitats. Cells are ovoid in shape with a single anterior flagellum encircled by a funnel-shaped collar of microvilli. Movement of the flagellum creates water currents from which food particles are entrapped on the outer surface of the collar and ingested by pseudopodia. One group of marine choanoflagellates has evolved an elaborate basket-like exoskeleton, the lorica, comprising two layers of siliceous costae made up of costal strips. A computer graphic model has been developed for generating three-dimensional images of choanoflagellate loricae based on a universal set of 'rules' derived from electron microscopical observations. This model has proved seminal in understanding how complex costal patterns can be assembled in a single continuous movement. The lorica, which provides a rigid framework around the cell, is multifunctional. It resists the locomotory forces generated by flagellar movement, directs and enhances water flow over the collar and, for planktonic species, contributes towards maintaining cells in suspension. Since the functional morphology of choanoflagellate cells is so effective and has been highly conserved within the group, the ecological and evolutionary radiation of choanoflagellates is almost entirely dependent on the ability of the external coverings, particularly the lorica, to diversify

Order in extremal trajectories

Given a chaotic dynamical system and a time interval in which some quantity takes an unusually large average value, what can we say of the trajectory that yields this deviation? As an example, we study the trajectories of the archetypical chaotic system, the baker's map. We show that, out of all irregular trajectories, a large-deviation requirement selects (isolated) orbits that are periodic or quasiperiodic. We discuss what the relevance of this calculation may be for dynamical systems and for glasses

Algebras of Measurements: the logical structure of Quantum Mechanics

In Quantum Physics, a measurement is represented by a projection on some closed subspace of a Hilbert space. We study algebras of operators that abstract from the algebra of projections on closed subspaces of a Hilbert space. The properties of such operators are justified on epistemological grounds. Commutation of measurements is a central topic of interest. Classical logical systems may be viewed as measurement algebras in which all measurements commute. Keywords: Quantum measurements, Measurement algebras, Quantum Logic. PACS: 02.10.-v.Comment: Submitted, 30 page

Order in glassy systems

A directly measurable correlation length may be defined for systems having a two-step relaxation, based on the geometric properties of density profile that remains after averaging out the fast motion. We argue that the length diverges if and when the slow timescale diverges, whatever the microscopic mechanism at the origin of the slowing down. Measuring the length amounts to determining explicitly the complexity from the observed particle configurations. One may compute in the same way the Renyi complexities K_q, their relative behavior for different q characterizes the mechanism underlying the transition. In particular, the 'Random First Order' scenario predicts that in the glass phase K_q=0 for q>x, and K_q>0 for q<x, with x the Parisi parameter. The hypothesis of a nonequilibrium effective temperature may also be directly tested directly from configurations.Comment: Typos corrected, clarifications adde

Geometry of Frictionless and Frictional Sphere Packings

We study static packings of frictionless and frictional spheres in three dimensions, obtained via molecular dynamics simulations, in which we vary particle hardness, friction coefficient, and coefficient of restitution. Although frictionless packings of hard-spheres are always isostatic (with six contacts) regardless of construction history and restitution coefficient, frictional packings achieve a multitude of hyperstatic packings that depend on system parameters and construction history. Instead of immediately dropping to four, the coordination number reduces smoothly from $z=6$ as the friction coefficient $\mu$ between two particles is increased.Comment: 6 pages, 9 figures, submitted to Phys. Rev.

Non-equilibrium fluctuation theorems in the presence of local heating

We study two non-equilibrium work fluctuation theorems, the Crooks' theorem and the Jarzynski equality, for a test system coupled to a spatially extended heat reservoir whose degrees of freedom are explicitly modeled. The sufficient conditions for the validity of the theorems are discussed in detail and compared to the case of classical Hamiltonian dynamics. When the conditions are met the fluctuation theorems are shown to hold despite the fact that the immediate vicinity of the test system goes out of equilibrium during an irreversible process. We also study the effect of the coupling to the heat reservoir on the convergence of $$ to its theoretical mean value, where $W$ is the work done on the test system and $\beta$ is the inverse temperature. It is shown that the larger the local heating, the slower the convergence.Comment: 8 pages, 7 figures, revised and extended version, to appear in Phys. Rev.