Shape-dependence of particle rotation in isotropic turbulence

We consider the rotation of neutrally buoyant axisymmetric particles suspended in isotropic turbulence. Using laboratory experiments as well as numerical and analytical calculations, we explore how particle rotation depends upon particle shape. We find that shape strongly affects orientational trajectories, but that it has negligible effect on the variance of the particle angular velocity. Previous work has shown that shape significantly affects the variance of the tumbling rate of axisymmetric particles. It follows that shape affects the spinning rate in a way that is, on average, complementary to the shape-dependence of the tumbling rate. We confirm this relationship using direct numerical simulations, showing how tumbling rate and spinning rate variances show complementary trends for rod-shaped and disk-shaped particles. We also consider a random but non-turbulent flow. This allows us to explore which of the features observed for rotation in turbulent flow are due to the effects of particle alignment in vortex tubes

Acceleration of phenological advance and warming with latitude over the past century.

In the Northern Hemisphere, springtime events are frequently reported as advancing more rapidly at higher latitudes, presumably due to an acceleration of warming with latitude. However, this assumption has not been investigated in an analytical framework that simultaneously examines acceleration of warming with latitude while accounting for variation in phenological time series characteristics that might also co-vary with latitude. We analyzed 743 phenological trend estimates spanning 86 years and 42.6 degrees of latitude in the Northern Hemisphere, as well as rates of Northern Hemisphere warming over the same period and latitudinal range. We detected significant patterns of co-variation in phenological time series characteristics that may confound estimates of the magnitude of variation in trends with latitude. Notably, shorter and more recent time series tended to produce the strongest phenological trends, and these also tended to be from higher latitude studies. However, accounting for such variation only slightly modified the relationship between rates of phenological advance and latitude, which was highly significant. Furthermore, warming has increased non-linearly with latitude over the past several decades, most strongly since 1998 and northward of 59°N latitude. The acceleration of warming with latitude has likely contributed to an acceleration of phenological advance along the same gradient

Logistic Barriers to U.S.–Mexico Grain and Soybean Trade

Fourteen years after the implementation of the North American Free Trade Agreement (NAFTA), border-crossing restrictions still remain with Mexico. Although studies have analyzed the impact of NAFTA trade liberalization, there has only been limited research on effects of informal trade barriers on U.S.–Mexico grain and soybean flows. This paper quantitatively measures the impact of logistic barriers impeding U.S.–Mexico grain and soybean trade. A conditional model testing for the presence of asymmetries in grain trade suggests that logistic barriers and transshipments are correlated. Econometric analysis rejects the null hypoInternational Relations/Trade,

Gene expression patterns following unilateral traumatic brain injury reveals a local pro-inflammatory and remote anti-inflammatory response.

BackgroundTraumatic brain injury (TBI) results in irreversible damage at the site of impact and initiates cellular and molecular processes that lead to secondary neural injury in the surrounding tissue. We used microarray analysis to determine which genes, pathways and networks were significantly altered using a rat model of TBI. Adult rats received a unilateral controlled cortical impact (CCI) and were sacrificed 24 h post-injury. The ipsilateral hemi-brain tissue at the site of the injury, the corresponding contralateral hemi-brain tissue, and naïve (control) brain tissue were used for microarray analysis. Ingenuity Pathway Analysis (IPA) software was used to identify molecular pathways and networks that were associated with the altered gene expression in brain tissues following TBI.ResultsInspection of the top fifteen biological functions in IPA associated with TBI in the ipsilateral tissues revealed that all had an inflammatory component. IPA analysis also indicated that inflammatory genes were altered on the contralateral side, but many of the genes were inversely expressed compared to the ipsilateral side. The contralateral gene expression pattern suggests a remote anti-inflammatory molecular response. We created a network of the inversely expressed common (i.e., same gene changed on both sides of the brain) inflammatory response (IR) genes and those IR genes included in pathways and networks identified by IPA that changed on only one side. We ranked the genes by the number of direct connections each had in the network, creating a gene interaction hierarchy (GIH). Two well characterized signaling pathways, toll-like receptor/NF-kappaB signaling and JAK/STAT signaling, were prominent in our GIH.ConclusionsBioinformatic analysis of microarray data following TBI identified key molecular pathways and networks associated with neural injury following TBI. The GIH created here provides a starting point for investigating therapeutic targets in a ranked order that is somewhat different than what has been presented previously. In addition to being a vehicle for identifying potential targets for post-TBI therapeutic strategies, our findings can also provide a context for evaluating the potential of therapeutic agents currently in development

Revisiting the STEC Testing Approach: Using espK and espV to Make Enterohemorrhagic Escherichia coli (EHEC) Detection More Reliable in Beef

Current methods for screening Enterohemorrhagic Escherichia coli (EHEC) O157 and non-O157 in beef enrichments typically rely on the molecular detection of stx, eae, and serogroup-specific wzx or wzy gene fragments. As these genetic markers can also be found in some non-EHEC strains, a number of “false positive” results are obtained. Here, we explore the suitability of five novel molecular markers, espK, espV, ureD, Z2098, and CRISPRO26:H11 as candidates for a more accurate screening of EHEC strains of greater clinical significance in industrialized countries. Of the 1739 beef enrichments tested, 180 were positive for both stx and eae genes. Ninety (50%) of these tested negative for espK, espV, ureD, and Z2098, but 12 out of these negative samples were positive for the CRISPRO26:H11 gene marker specific for a newly emerging virulent EHEC O26:H11 French clone. We show that screening for stx, eae, espK, and espV, in association with the CRISPRO26:H11 marker is a better approach to narrow down the EHEC screening step in beef enrichments. The number of potentially positive samples was reduced by 48.88% by means of this alternative strategy compared to the European and American reference methods, thus substantially improving the discriminatory power of EHEC screening systems. This approach is in line with the EFSA (European Food Safety Authority) opinion on pathogenic STEC published in 2013