682 research outputs found

    Time of arrival in the presence of interactions

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    We introduce a formalism for the calculation of the time of arrival t at a space point for particles traveling through interacting media. We develop a general formulation that employs quantum canonical transformations from the free to the interacting cases to construct t in the context of the Positive Operator Valued Measures. We then compute the probability distribution in the times of arrival at a point for particles that have undergone reflection, transmission or tunneling off finite potential barriers. For narrow Gaussian initial wave packets we obtain multimodal time distributions of the reflected packets and a combination of the Hartman effect with unexpected retardation in tunneling. We also employ explicitly our formalism to deal with arrivals in the interaction region for the step and linear potentials.Comment: 20 pages including 5 eps figure

    Transmission time of wave packets through tunneling barriers

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    The transmission of wave packets through tunneling barriers is studied in detail by the method of quantum molecular dynamics. The distribution function of the times describing the arrival of a tunneling packet in front of and behind a barrier and the momentum distribution function of the packet are calculated. The behavior of the average coordinate of a packet, the average momentum, and their variances is investigated. It is found that under the barrier a part of the packet is reflected and a Gaussian barrier increases the average momentum of the transmitted packet and its variance in momentum space.Comment: 23 pages, 5 figure

    Dynamics of entanglement between two trapped atoms

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    We investigate the dynamics of entanglement between two continuous variable quantum systems. The model system consists of two atoms in a harmonic trap which are interacting by a simplified s-wave scattering. We show, that the dynamically created entanglement changes in a steplike manner. Moreover, we introduce local operators which allow us to violate a Bell-CHSH inequality adapted to the continuous variable case. The correlations show nonclassical behavior and almost reach the maximal quantum mechanical value. This is interesting since the states prepared by this interaction are very different from any EPR-like state.Comment: 9 page

    KIR-HLA interactions extend human CD8+ T cell lifespan in vivo.

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    BACKGROUND: There is increasing evidence, in transgenic mice and in vitro, that inhibitory killer cell immunoglobulin-like receptors (iKIRs) can modulate T cell responses. Furthermore, we have previously shown that iKIRs are an important determinant of T cell-mediated control of chronic virus infection and that these results are consistent with an increase in CD8+ T cell lifespan due to iKIR-ligand interactions. Here we test this prediction and investigate whether iKIRs affect T cell lifespan in humans in vivo. METHODS: We used stable isotope labelling with deuterated water to quantify memory CD8+ T cell survival in healthy individuals and patients with chronic viral infections. RESULTS: We showed that an individual's iKIR-ligand genotype is a significant determinant of CD8+ T cell lifespan: in individuals with two iKIR-ligand gene pairs, memory CD8+ T cells survived on average for 125 days, in individuals with four iKIR-ligand gene pairs then memory CD8+ T cell lifespan was doubled to 250 days. Additionally, we showed that this survival advantage is independent of iKIR expression by the T cell of interest and further that iKIR-ligand genotype altered CD8+ and CD4+ T cell immune aging phenotype. CONCLUSIONS: Together these data reveal an unexpectedly large impact of iKIR genotype on T cell survival. FUNDING: Wellcome Trust, Medical Research Council, EU Horizon 2020, EU FP7, Leukemia and Lymphoma Research, National Institute of Health Research Imperial Biomedical Research Centre, Imperial College Research Fellowship, National Institute of Health, Jefferiss Trust

    Incorporation of enzyme concentrations into FBA and identification of optimal metabolic pathways

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    <p>Abstract</p> <p>Background</p> <p>In the present article, we propose a method for determining optimal metabolic pathways in terms of the level of concentration of the enzymes catalyzing various reactions in the entire metabolic network. The method, first of all, generates data on reaction fluxes in a pathway based on steady state condition. A set of constraints is formulated incorporating weighting coefficients corresponding to concentration of enzymes catalyzing reactions in the pathway. Finally, the rate of yield of the target metabolite, starting with a given substrate, is maximized in order to identify an optimal pathway through these weighting coefficients.</p> <p>Results</p> <p>The effectiveness of the present method is demonstrated on two synthetic systems existing in the literature, two pentose phosphate, two glycolytic pathways, core carbon metabolism and a large network of carotenoid biosynthesis pathway of various organisms belonging to different phylogeny. A comparative study with the existing extreme pathway analysis also forms a part of this investigation. Biological relevance and validation of the results are provided. Finally, the impact of the method on metabolic engineering is explained with a few examples.</p> <p>Conclusions</p> <p>The method may be viewed as determining an optimal set of enzymes that is required to get an optimal metabolic pathway. Although it is a simple one, it has been able to identify a carotenoid biosynthesis pathway and the optimal pathway of core carbon metabolic network that is closer to some earlier investigations than that obtained by the extreme pathway analysis. Moreover, the present method has identified correctly optimal pathways for pentose phosphate and glycolytic pathways. It has been mentioned using some examples how the method can suitably be used in the context of metabolic engineering.</p
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