Seasonal and topographic variations in porewaters of a southeastern USA salt marsh as revealed by voltammetric profiling†

We report electrochemical profiles from unvegetated surficial sediments of a Georgia salt marsh. In creek bank sediments, the absence of ΣH(2)S or FeS(aq )and the presence of Fe(III)–organic complexes suggest that Mn and Fe reduction dominates over at least the top ca. 5 cm of the sediment column, consistent with other recent results. In unvegetated flats, accumulation of ΣH(2)S indicates that SO(4)(2- )reduction dominates over the same depth. A summer release of dissolved organic species from the dominant tall form Spartina alterniflora, together with elevated temperatures, appears to result in increased SO(4)(2- )reduction intensity and hence high summer concentrations of ΣH(2)S in flat sediments. However, increased bioturbation and/or bioirrigation seem to prevent this from happening in bank sediments. Studies of biogeochemical processes in salt marshes need to take such spatial and temporal variations into account if we are to develop a good understanding of these highly productive ecosystems. Furthermore, multidimensional analyses are necessary to obtain adequate quantitative pictures of such heterogeneous sediments

Morphometric analysis of the submarine arc volcano Monowai (Tofua – Kermadec Arc) to decipher tectono-magmatic interactions

Morphometric analysis of multibeam bathymetry and backscatter data is applied to Monowai, a submarine volcano of the active Tofua–Kermadec Arc to map and document the structure and evolution of the volcanic centre. Low rates of erosion and sedimentation, and pervasive tectonic and magmatic processes, allow quantification through detailed structural analysis and measurement of deformation. The Slope, Aspect, Curvature, Rugosity, and Hydrology (flow) tools of ArcGIS provide a robust structural interpretation and the development of a model of Monowai evolution.A nested caldera structure with a volume of ~ 31 km3 and a stratovolcano of ~ 18 km3 dominate the magmatic constructs. The outer caldera is elongate along 125°, and the inner caldera along 135°. Numerous parasitic cones and fissure ridges are also observed, oriented at 039° and 041°, respectively. Northeast trending faults (with a regional average strike of 031°) are widespread within this part of the backarc, forming a nascent rift graben to the west of the Monowai caldera complex. The distribution of throw varies spatially, reaching a maximum total along-rift of 320 m and across rift of 120 m, with greater throw values measured in the west.Elongation directions of the two nested calderas are near-perpendicular to the trends of faults and fissure ridges. The inner caldera is more orthogonal to the magmatic constructs (fissure ridges and aligned vent cones) and the outer caldera is approximately orthogonal to the regional fault fabric, suggesting a strong interaction between magmatic and tectonic processes, and the directions of the horizontal principal stress. We present a detailed morphometric analysis of these relationships and the data are used to interpret the spatial and temporal evolution of the tectono-magmatic system at Monowai, and classify the type of rifting as transtensional. Similar analysis is possible elsewhere in the Kermadec backarc and within other regions of submarine volcanism

Correlates of walking and cycling for transport and recreation: factor structure, reliability and behavioural associations of the perceptions of the environment in the neighbourhood scale (PENS).

BACKGROUND: Emerging evidence suggests that walking and cycling for different purposes such as transport or recreation may be associated with different attributes of the physical environment. Few studies to date have examined these behaviour-specific associations, particularly in the UK. This paper reports on the development, factor structure and test-retest reliability of a new scale assessing perceptions of the environment in the neighbourhood (PENS) and the associations between perceptions of the environment and walking and cycling for transport and recreation. METHODS: A new 13-item scale was developed for assessing adults' perceptions of the environment in the neighbourhood (PENS). Three sets of analyses were conducted using data from two sources. Exploratory and confirmatory factor analyses were used to identify a set of summary environmental variables using data from the iConnect baseline survey (n = 3494); test-retest reliability of the individual and summary environmental items was established using data collected in a separate reliability study (n = 166); and multivariable logistic regression was used to determine the associations of the environmental variables with walking for transport, walking for recreation, cycling for transport and cycling for recreation, using iConnect baseline survey data (n = 2937). RESULTS: Four summary environmental variables (traffic safety, supportive infrastructure, availability of local amenities and social order), one individual environmental item (street connectivity) and a variable encapsulating general environment quality were identified for use in further analyses. Intraclass correlations of these environmental variables ranged from 0.44 to 0.77 and were comparable to those seen in other similar scales. After adjustment for demographic and other environmental factors, walking for transport was associated with supportive infrastructure, availability of local amenities and general environment quality; walking for recreation was associated with supportive infrastructure; and cycling for transport was associated only with street connectivity. There was limited evidence of any associations between environmental attributes and cycling for recreation. CONCLUSION: PENS is acceptable as a short instrument for assessing perceptions of the urban environment. Previous findings that different attributes of the environment may be associated with different behaviours are confirmed. Policy action to create supportive environments may require a combination of environmental improvements to promote walking and cycling for different purposes.RIGHTS : This article is licensed under the BioMed Central licence at http://www.biomedcentral.com/about/license which is similar to the 'Creative Commons Attribution Licence'. In brief you may : copy, distribute, and display the work; make derivative works; or make commercial use of the work - under the following conditions: the original author must be given credit; for any reuse or distribution, it must be made clear to others what the license terms of this work are

Reliability and validity of the transport and physical activity questionnaire (TPAQ) for assessing physical activity behaviour

No current validated survey instrument allows a comprehensive assessment of both physical activity and travel behaviours for use in interdisciplinary research on walking and cycling. This study reports on the test-retest reliability and validity of physical activity measures in the transport and physical activity questionnaire (TPAQ)

Gas migration pathways, controlling mechanisms and changes in sediment acoustic properties observed in a controlled sub-seabed CO2 release experiment

Carbon capture and storage (CCS) is a key technology to potentially mitigate global warming by reducing carbon dioxide (CO2) emissions from industrial facilities and power generation that escape into the atmosphere. To broaden the usage of geological storage as a viable climate mitigation option, it is vital to understand CO2 behaviour after its injection within a storage reservoir, including its potential migration through overlying sediments, as well as biogeochemical and ecological impacts in the event of leakage. The impacts of a CO2 release were investigated by a controlled release experiment that injected CO2 at a known flux into shallow, under-consolidated marine sediments for 37 days. Repeated high-resolution 2D seismic reflection surveying, both pre-release and syn-release, allows the detection of CO2-related anomalies, including: seismic chimneys; enhanced reflectors within the subsurface; and bubbles within the water column. In addition, reflection coefficient and seismic attenuation values calculated for each repeat survey, allow the impact of CO2 flux on sediment acoustic properties to be comparatively monitored throughout the gas release. CO2 migration is interpreted as being predominantly controlled by sediment stratigraphy in the early stages of the experiment. However, either the increasing flow rate, or the total injected volume become the dominant factors determining CO2 migration later in the experiment

Effect of questionnaire length, personalisation and reminder type on response rate to a complex postal survey: randomised controlled trial

Background: Minimising participant non-response in postal surveys helps to maximise the generalisability of the inferences made from the data collected. The aim of this study was to examine the effect of questionnaire length, personalisation and reminder type on postal survey response rate and quality and to compare the cost-effectiveness of the alternative survey strategies. Methods: In a pilot study for a population study of travel behaviour, physical activity and the environment, 1000 participants sampled from the UK edited electoral register were randomly allocated using a 2 × 2 factorial design to receive one of four survey packs: a personally addressed long (24 page) questionnaire pack, a personally addressed short (15 page) questionnaire pack, a non-personally addressed long questionnaire pack or a non-personally addressed short questionnaire pack. Those who did not return a questionnaire were stratified by initial randomisation group and further randomised to receive either a full reminder pack or a reminder postcard. The effects of the survey design factors on response were examined using multivariate logistic regression. Results: An overall response rate of 17% was achieved. Participants who received the short version of the questionnaire were more likely to respond (OR = 1.48, 95% CI 1.06 to 2.07). In those participants who received a reminder, personalisation of the survey pack and reminder also increased the odds of response (OR = 1.44, 95% CI 1.01 to 1.95). Item non-response was relatively low, but was significantly higher in the long questionnaire than the short (9.8% vs 5.8%; p = .04). The cost per additional usable questionnaire returned of issuing the reminder packs was £23.1 compared with £11.3 for the reminder postcards. Conclusions: In contrast to some previous studies of shorter questionnaires, this trial found that shortening a relatively lengthy questionnaire significantly increased the response. Researchers should consider the trade off between the value of additional questions and a larger sample. If low response rates are expected, personalisation may be an important strategy to apply. Sending a full reminder pack to non-respondents appears a worthwhile, albeit more costly, strategy

Promiscuity in the part-phosphorylative Entner–Doudoroff pathway of the archaeon Sulfolobus solfataricus

AbstractThe hyperthermophilic archaeon Sulfolobus solfataricus metabolises glucose and galactose by a ‘promiscuous’ non-phosphorylative variant of the Entner–Doudoroff pathway, in which a series of enzymes have sufficient substrate promiscuity to permit the metabolism of both sugars. Recently, it has been proposed that the part-phosphorylative Entner–Doudoroff pathway occurs in parallel in S. solfataricus as an alternative route for glucose metabolism. In this report we demonstrate, by in vitro kinetic studies of d-2-keto-3-deoxygluconate (KDG) kinase and KDG aldolase, that the part-phosphorylative pathway in S. solfataricus is also promiscuous for the metabolism of both glucose and galactose

Reliability and validity of the transport and physical activity questionnaire (TPAQ) for assessing physical activity behaviour

Background: No current validated survey instrument allows a comprehensive assessment of both physical activity and travel behaviours for use in interdisciplinary research on walking and cycling. This study reports on the test-retest reliability and validity of physical activity measures in the transport and physical activity questionnaire (TPAQ). Methods: The TPAQ assesses time spent in different domains of physical activity and using different modes of transport for five journey purposes. Test-retest reliability of eight physical activity summary variables was assessed using intra-class correlation coefficients (ICC) and Kappa scores for continuous and categorical variables respectively. In a separate study, the validity of three survey-reported physical activity summary variables was assessed by computing Spearman correlation coefficients using accelerometer-derived reference measures. The Bland-Altman technique was used to determine the absolute validity of survey-reported time spent in moderate-to-vigorous physical activity (MVPA). Results: In the reliability study, ICC for time spent in different domains of physical activity ranged from fair to substantial for walking for transport (ICC = 0.59), cycling for transport (ICC = 0.61), walking for recreation (ICC = 0.48), cycling for recreation (ICC = 0.35), moderate leisure-time physical activity (ICC = 0.47), vigorous leisure-time physical activity (ICC = 0.63), and total physical activity (ICC = 0.56). The proportion of participants estimated to meet physical activity guidelines showed acceptable reliability (k = 0.60). In the validity study, comparison of survey-reported and accelerometer-derived time spent in physical activity showed strong agreement for vigorous physical activity (r = 0.72, p,0.001), fair but non-significant agreement for moderate physical activity (r = 0.24, p = 0.09) and fair agreement for MVPA (r = 0.27, p = 0.05). Bland-Altman analysis showed a mean overestimation of MVPA of 87.6 min/week (p = 0.02) (95% limits of agreement 2447.1 to +622.3 min/week). Conclusion: The TPAQ provides a more comprehensive assessment of physical activity and travel behaviours and may be suitable for wider use. Its physical activity summary measures have comparable reliability and validity to those of similar existing questionnaires

High background rates of positive tuberculosis-specific interferon-? release assays in a low prevalence region of UK: a surveillance study

Background: Background rates of latent tuberculosis infection in low prevalence regions of Britain are unknown. These would be valuable data for interpreting positive IGRA results, and guiding cost-benefit analyses. The management of a large outbreak of tuberculosis occurring in a rural district hospital provided an opportunity to determine the background rates and epidemiology of IGRA-positivity amongst unselected hospital patients in a low-prevalence region of U.K.Methods: As part of a public health surveillance project we identified 445 individuals exposed to the index cases for clinical assessment and testing by a TB-specific interferon-? release assay (IGRA): T-Spot.TB. Uniquely, an additional comparator group of 191 age-matched individuals without specific recent exposure, but with a similar age distribution and demographic, were recruited from the same wards where exposure had previously occurred, to undergo assessment by questionnaire and IGRA. Results: Rates of IGRA positivity were 8.7% (95%CI, 4.2-13, n=149) amongst unexposed patients, 9.5%(3.0-22, n=21) amongst unexposed staff, 22%(14–29, n=130) amongst exposed patients, 11%(6.1-16, n=142) amongst exposed staff. Amongst the individuals without history of recent exposure to the outbreak, IGRA-positivity was associated with prior TB treatment (OR11, P.04) and corticosteroid use (OR5.9, P.02). Background age-specific prevalences of IGRA-positivity amongst unexposed individuals were: age <40 0%(N/A), age 40–59 15%(12–29), age 60–79 7.0%(1.1-13), age?80 10%(5.9-19).Conclusions: Background rates of IGRA-positivity remain high amongst unselected white-Caucasian hospital inpatients in U.K. These data will aid interpretation of future outbreak studies. As rates peak in the 5th and 6th decade, given an ageing population and increasing iatrogenic immunosuppression, reactivation of LTBI may be a persistent hazard in this population for several decades to come