Online-Appendix-Chernomor_et_al

Online-Appendix-Chernomor_et_a

Additional file 2 of MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation

Description of data: MP-score and runtimes (in seconds) of examined methods on 114 out of 115 TreeBASE MSAs. The file contains two sheets: one for results of analyses under uniform cost matrices and the other for those under non-uniform cost matrices. (XLSX 29 kb

Additional file 3 of MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation

Spreadsheet of summary statistics for comparing MPBoot and TNT bootstrap tree MP-scores by replicate counts and by MP-score difference for 114 TreeBASE MSAs. (XLS 51 kb

Additional file 4 of MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation

Figures for i) distribution of MP-score difference between TNT and MPBoot on bootstrap MSAs for 114 TreeBASE MSAs, ii) distribution of runtime ratio between MPBoot and UFBoot2 for 114 TreeBASE MSAs. (DOCX 169 kb

Additional file 1 of MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation

Commands used in this study for performing parsimony analyses by TNT and PAUP*. (DOCX 14 kb