267 research outputs found
High frequency sound waves in vitreous silica
We report a molecular dynamics simulation study of the sound waves in
vitreous silica in the mesoscopic exchanged momentum range. The calculated
dynamical structure factors are in quantitative agreement with recent
experimental inelastic neutron and x-ray scattering data. The analysis of the
longitudinal and transverse current spectra allows to discriminate between
opposite interpretations of the existing experimental data in favour of the
propagating nature of the high frequency sound waves.Comment: 4 pages, Revtex, 4 ps figures; to be published in Phys. Rev. Lett.,
February 198
Interaction of quasilocal harmonic modes and boson peak in glasses
The direct proportionality relation between the boson peak maximum in
glasses, , and the Ioffe-Regel crossover frequency for phonons,
, is established. For several investigated materials . At the frequency the mean free path of the
phonons becomes equal to their wavelength because of strong resonant
scattering on quasilocal harmonic oscillators. Above this frequency phonons
cease to exist. We prove that the established correlation between
and holds in the general case and is a direct consequence of
bilinear coupling of quasilocal oscillators with the strain field.Comment: RevTex, 4 pages, 1 figur
The distribution of polycomb-group proteins during cell division and development in Drosophila embryos: Impact on models for silencing
The subcellular three-dimensional distribution of three polycomb-group (PcG) proteins—polycomb, polyhomeotic and posterior sex combs—in fixed whole-mount Drosophila embryos was analyzed by multicolor confocal fluorescence microscopy. All three proteins are localized in complex patterns of 100 or more loci throughout most of the interphase nuclear volume. The rather narrow distribution of the protein intensities in the vast majority of loci argues against a PcG-mediated sequestration of repressed target genes by aggregation into subnuclear domains. In contrast to the case for PEV repression (Csink, A.K., and S. Henikoff. 1996. Nature. 381:529–531), there is a lack of correlation between the occurrence of PcG proteins and high concentrations of DNA, demonstrating that the silenced genes are not targeted to heterochromatic regions within the nucleus. There is a clear distinction between sites of transcription in the nucleus and sites of PcG binding, supporting the assumption that most PcG binding loci are sites of repressive complexes. Although the PcG proteins maintain tissue-specific repression for up to 14 cell generations, the proteins studied here visibly dissociate from the chromatin during mitosis, and disperse into the cytoplasm in a differential manner. Quantitation of the fluorescence intensities in the whole mount embryos demonstrate that the dissociated proteins are present in the cytoplasm. We determined that <2% of PH remains attached to late metaphase and anaphase chromosomes. Each of the three proteins that were studied has a different rate and extent of dissociation at prophase and reassociation at telophase. These observations have important implications for models of the mechanism and maintenance of PcG- mediated gene repression
The distribution of Polycomb-group proteins during cell division and development in Drosophila embryos: impact on models for silencing
The subcellular three-dimensional distribution of three polycomb-group (PcG) proteins-polycomb, polyhomeotic and posterior sex combs-in fixed whole-mount Drosophila embryos was analyzed by multicolor confocal fluorescence microscopy. All three proteins are localized in complex patterns of 100 or more loci throughout most of the interphase nuclear volume. The rather narrow distribution of the protein intensities in the vast majority of loci argues against a PcG-mediated sequestration of repressed target genes by aggregation into subnuclear domains. In contrast to the case for PEV repression (Csink, A.K., and S. Henikoff. 1996. Nature. 381:529-531), there is a lack of correlation between the occurrence of PcG proteins and high concentrations of DNA, demonstrating that the silenced genes are not targeted to heterochromatic regions within the nucleus. There is a clear distinction between sites of transcription in the nucleus and sites of PcG binding, supporting the assumption that most PcG binding loci are sites of repressive complexes. Although the PcG proteins maintain tissue-specific repression for up to 14 cell generations, the proteins studied here visibly dissociate from the chromatin during mitosis, and disperse into the cytoplasm in a differential manner. Quantitation of the fluorescence intensities in the whole mount embryos demonstrate that the dissociated proteins are present in the cytoplasm. We determined that <2% of PH remains attached to late metaphase and anaphase chromosomes. Each of the three proteins that were studied has a different rate and extent of dissociation at prophase and reassociation at telophase. These observations have important implications for models of the mechanism and maintenance of PcG-mediated gene repression
Observation of Umklapp processes in non-crystalline materials
Umklapp processes are known to exist in cristalline materials, where they
control important properties such as thermal conductivity, heat capacity and
electrical conductivity. In this work we report the provocative observation of
Umklapp processes in a non-periodical system, namely liquid Lithium. The lack
of a well defined periodicity seems then not to prevent the existence of these
scattering processes mechanisms provided that the local order of the systems
i.e. the maxima of the static structure factor supply the equivalent of a
reciprocal lattice vector in the case of cristalline materials.Comment: 13 pages P
Phonons from neutron powder diffraction
The spherically averaged structure function \soq obtained from pulsed
neutron powder diffraction contains both elastic and inelastic scattering via
an integral over energy. The Fourier transformation of \soq to real space, as
is done in the pair density function (PDF) analysis, regularizes the data, i.e.
it accentuates the diffuse scattering. We present a technique which enables the
extraction of off-center phonon information from powder diffraction experiments
by comparing the experimental PDF with theoretical calculations based on
standard interatomic potentials and the crystal symmetry. This procedure
(dynamics from powder diffraction(DPD)) has been successfully implemented for
two systems, a simple metal, fcc Ni, and an ionic crystal, CaF. Although
computationally intensive, this data analysis allows for a phonon based
modeling of the PDF, and additionally provides off-center phonon information
from powder neutron diffraction
Energy landscape - a key concept for the dynamics of glasses and liquids
There is a growing belief that the mode coupling theory is the proper
microscopic theory for the dynamics of the undercooled liquid above a critical
temperature T_c. In addition, there is some evidence that the system leaves the
saddlepoints of the energy landscape to settle in the valleys at this critical
temperature. Finally, there is a microscopic theory for the entropy at the
calorimetric glass transition T_g by Mezard and Parisi, which allows to
calculate the Kauzmann temperature from the atomic pair potentials.
The dynamics of the frozen glass phase is at present limited to
phenomenological models. In the spirit of the energy landscape concept, one
considers an ensemble of independent asymmetric double-well potentials with a
wide distribution of barrier heights and asymmetries (ADWP or Gilroy-Phillips
model). The model gives an excellent description of the relaxation of glasses
up to about T_g/4. Above this temperature, the interaction between different
relaxation centers begins to play a role. One can show that the interaction
reduces the number of relaxation centers needed to bring the shear modulus down
to zero by a factor of three.Comment: Contribution to the III Workshop on Nonequilibrium Phenomena in
Supercooled Fluids, Glasses and Amorphous Materials, 22-27 September 2002,
Pisa; 14 pages, 3 figures; Version 3 takes criticque at Pisa into account;
final version 4 will be published in J.Phys.: Condens.Matte
The Raman coupling function in amorphous silica and the nature of the long wavelength excitations in disordered systems
New Raman and incoherent neutron scattering data at various temperatures and
molecular dynamic simulations in amorphous silica, are compared to obtain the
Raman coupling coefficient and, in particular, its low frequency
limit. This study indicates that in the limit
extrapolates to a non vanishing value, giving important indications on the
characteristics of the vibrational modes in disordered materials; in particular
our results indicate that even in the limit of very long wavelength the local
disorder implies non-regular local atomic displacements.Comment: Revtex, 4 ps figure
Voronoi-Delaunay analysis of normal modes in a simple model glass
We combine a conventional harmonic analysis of vibrations in a one-atomic
model glass of soft spheres with a Voronoi-Delaunay geometrical analysis of the
structure. ``Structure potentials'' (tetragonality, sphericity or perfectness)
are introduced to describe the shape of the local atomic configurations
(Delaunay simplices) as function of the atomic coordinates. Apart from the
highest and lowest frequencies the amplitude weighted ``structure potential''
varies only little with frequency. The movement of atoms in soft modes causes
transitions between different ``perfect'' realizations of local structure. As
for the potential energy a dynamic matrix can be defined for the ``structure
potential''. Its expectation value with respect to the vibrational modes
increases nearly linearly with frequency and shows a clear indication of the
boson peak. The structure eigenvectors of this dynamical matrix are strongly
correlated to the vibrational ones. Four subgroups of modes can be
distinguished
The crossover from propagating to strongly scattered acoustic modes of glasses observed in densified silica
Spectroscopic results on low frequency excitations of densified silica are
presented and related to characteristic thermal properties of glasses. The end
of the longitudinal acoustic branch is marked by a rapid increase of the
Brillouin linewidth with the scattering vector. This rapid growth saturates at
a crossover frequency Omega_co which nearly coincides with the center of the
boson peak. The latter is clearly due to additional optic-like excitations
related to nearly rigid SiO_4 librations as indicated by hyper-Raman
scattering. Whether the onset of strong scattering is best described by
hybridization of acoustic modes with these librations, by their elastic
scattering (Rayleigh scattering) on the local excitations, or by soft
potentials remains to be settled.Comment: 14 pages, 6 figures, to be published in a special issue of J. Phys.
Condens. Matte
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