Engineering microbial consortia to enhance biomining and bioremediation

In natural environments microorganisms commonly exist as communities of multiple species that are capable of performing more varied and complicated tasks than clonal populations. Synthetic biologists have engineered clonal populations with characteristics such as differentiation, memory, and pattern formation, which are usually associated with more complex multicellular organisms. The prospect of designing microbial communities has alluring possibilities for environmental, biomedical, and energy applications, and is likely to reveal insight into how natural microbial consortia function. Cell signaling and communication pathways between different species are likely to be key processes for designing novel functions in synthetic and natural consortia. Recent efforts to engineer synthetic microbial interactions will be reviewed here, with particular emphasis given to research with significance for industrial applications in the field of biomining and bioremediation of acid mine drainage

Strain localization in polycrystalline material with second phase particles: Numerical modeling with application to ice mixtures

We use a centimeter-scale 2-D numerical model to investigate the effect of the presence of a second phase with various volume percent, shape, and orientation on strain localization in a viscoelastic matrix. In addition, the evolution of bulk rheological behavior of aggregates during uniaxial compression is analyzed. The rheological effect of dynamic recrystallization processes in the matrix is reproduced by viscous strain softening. We show that the presence of hard particles strengthens the aggregate, but also causes strain localization and the formation of ductile shear zones in the matrix. The presence of soft particles weakens the aggregate, while strain localizes within the particles and matrix between particles. The shape and the orientation of second phases control the orientation, geometry, and connectivity of ductile shear zones. We propose an analytical scaling method that translates the bulk stress measurements of our 2-D simulations to 3-D experiments. Comparing our model to the laboratory uniaxial compression experiments on ice cylinders with hard second phases allows the analysis of transient and steady-state strain distribution in ice matrix, and strain partitioning between ice and second phases through empirical calibration of viscous softening parameters. We find that the ice matrix in two-phase aggregates accommodates more strain than the applied bulk strain, while at faster strain rates some of the load is transferred into hard particles. Our study illustrates that dynamic recrystallization processes in the matrix are markedly influenced by the presence of a second phase

The canavanine-pentacyanoamine ferrate complex formation.

The complexation of pentacyanoamine ferrate with canavanine is not a specific one. Other amino acids, especially tryptophan and histidine may also react with proper analytical features. Se also do the indolyl and imidazolyl moieties of nonamino acids. Photoactivation does neither seem to occur by exposure of the pentacyanoamine ferrate reagent to daylight, nor is it a perequisite for a more sensitive response of canavanine complexation. On the other hand, oxidants and reducers may well interfere with the absorbance of the complex. In addition molar absorbance, stoichiometric ratio of the complex, and reation-order kinetics were determined. By mean of temperature programming equilibrion constant andreaction kinetics, enthalpy, Gibbs nenergy, entropy values, and activation energy of complex formation were stablished

Generating and probing a two-photon Fock state with a single atom in a cavity

A two-photon Fock state is prepared in a cavity sustaining a "source mode " and a "target mode", with a single circular Rydberg atom. In a third-order Raman process, the atom emits a photon in the target while scattering one photon from the source into the target. The final two-photon state is probed by measuring by Ramsey interferometry the cavity light shifts induced by the target field on the same atom. Extensions to other multi-photon processes and to a new type of micromaser are briefly discussed

The geomorphological setting of some of Scotland's east coast freshwater mills: a comment on Downward and Skinner (2005) ‘Working rivers: the geomorphological legacy...’

Many of the water mills on Scotland's east coast streams, unlike those discussed recently by Downward and Skinner (2005 Area 37 138–47), are found in predominantly bedrock reaches immediately downstream of knickpoints (i.e. bedrock steps). Bedrock knickpoints in the lower reaches of Scottish rivers are a widespread fluvial response to the glacio-isostatic rebound of northern Britain. These steps in the river profile propagate headward over time, but for intervals of a few centuries or so they are sufficiently stable to be exploited for the elevational fall necessary to power the mill wheel. Many of these mills were apparently powered by ‘run-of-the-river’, as are some today that formerly had mill dams. The typical lack of sediment storage along the erosional lower reaches of many Scottish rivers means that failure of mill structures in Scotland will probably have less dramatic geomorphological and management implications than those suggested by Downward and Skinner for southern English rivers

Test of quantum nonlocality for cavity fields

There have been studies on formation of quantum-nonlocal states in spatially separate two cavities. We suggest a nonlocal test for the field prepared in the two cavities. We couple classical driving fields with the cavities where a nonlocal state is prepared. Two independent two-level atoms are then sent through respective cavities to interact off-resonantly with the cavity fields. The atomic states are measured after the interaction. Bell's inequality can be tested by the joint probabilities of two-level atoms being in their excited or ground states. We find that quantum nonlocality can also be tested using a single atom sequentially interacting with the two cavities. Potential experimental errors are also considered. We show that with the present experimental condition of 5% error in the atomic velocity distribution, the violation of Bell's inequality can be measured.Comment: 14pages, 2figures. accepted to Phys. Rev.

Oblique rifting: the rule, not the exception

Movements of tectonic plates often induce oblique deformation at divergent plate boundaries. This is in striking contrast with traditional conceptual models of rifting and rifted margin formation, which often assume 2-D deformation where the rift velocity is oriented perpendicular to the plate boundary. Here we quantify the validity of this assumption by analysing the kinematics of major continent-scale rift systems in a global plate tectonic reconstruction from the onset of Pangea breakup until the present day. We evaluate rift obliquity by joint examination of relative extension velocity and local rift trend using the script-based plate reconstruction software pyGPlates. Our results show that the global mean rift obliquity since 230&thinsp;Ma amounts to 34° with a standard deviation of 24°, using the convention that the angle of obliquity is spanned by extension direction and rift trend normal. We find that more than  ∼ 70&thinsp;% of all rift segments exceeded an obliquity of 20° demonstrating that oblique rifting should be considered the rule, not the exception. In many cases, rift obliquity and extension velocity increase during rift evolution (e.g. Australia-Antarctica, Gulf of California, South Atlantic, India-Antarctica), which suggests an underlying geodynamic correlation via obliquity-dependent rift strength. Oblique rifting produces 3-D stress and strain fields that cannot be accounted for in simplified 2-D plane strain analysis. We therefore highlight the importance of 3-D approaches in modelling, surveying, and interpretation of most rift segments on Earth where oblique rifting is the dominant mode of deformation.</p

REACTIVITY OF CHLOROPHYLL a/b-PROTEINS AND MICELLAR TRITON X-100 COMPLEXES OF CHLOROPHYLLS a OR b WITH BOROHYDRIDE

The reaction of several plant chlorophyll-protein complexes with NaBH4 has been studied by absorption spectroscopy. In all the complexes studied, chlorophyll b is more reactive than Chi a, due to preferential reaction of its formyl substituent at C-7. The complexes also show large variations in reactivity towards NaBH4 and the order of reactivity is: LHCI > PSII complex > LHCII > PSI > P700 (investigated as a component of PSI). Differential pools of the same type of chlorophyll have been observed in several complexes. Parallel work was undertaken on the reactivity of micellar complexes of chlorophyll a and of chlorophyll b with NaBH4 to study the effect of aggregation state on this reactivity. In these complexes, both chlorophyll a and b show large variations in reactivity in the order monomer > oligomer > polymer with chlorophyll b generally being more reactive than chlorophyll a. It is concluded that aggregation decreases the reactivity of chlorophylls towards NaBH4 in vitro, and may similarly decrease reactivity in naturally-occurring chlorophyll-protein complexes

Precision Measurements of d(d,p)t and d(d,n)^3He Total Cross Sections at Big-Bang Nucleosynthesis Energies

Recent Wilkinson Microwave Anisotropy Probe (WMAP) measurements have determined the baryon density of the Universe $\Omega_b$ with a precision of about 4%. With $\Omega_b$ tightly constrained, comparisons of Big Bang Nucleosynthesis (BBN) abundance predictions to primordial abundance observations can be made and used to test BBN models and/or to further constrain abundances of isotopes with weak observational limits. To push the limits and improve constraints on BBN models, uncertainties in key nuclear reaction rates must be minimized. To this end, we made new precise measurements of the d(d,p)t and d(d,n)^3He total cross sections at lab energies from 110 keV to 650 keV. A complete fit was performed in energy and angle to both angular distribution and normalization data for both reactions simultaneously. By including parameters for experimental variables in the fit, error correlations between detectors, reactions, and reaction energies were accurately tabulated by computational methods. With uncertainties around 2% +/- 1% scale error, these new measurements significantly improve on the existing data set. At relevant temperatures, using the data of the present work, both reaction rates are found to be about 7% higher than those in the widely used Nuclear Astrophysics Compilation of Reaction Rates (NACRE). These data will thus lead not only to reduced uncertainties, but also to modifications in the BBN abundance predictions.Comment: 15 pages, 11 figures, minor editorial change

Spin excitations in a 4f-3d heterodimer on MgO

We report on the magnetic properties of HoCo dimers as a model system for the smallest intermetallic transition metal-lanthanide compound. The dimers are adsorbed on ultrathin MgO(100) films grown on Ag(100). New for $4f$ elements, we detect inelastic excitations with scanning tunneling microscopy and prove by their behaviour in applied magnetic field that they are spin-excitations. In combination with density functional theory and spin Hamiltonian analysis we determine the magnetic level distribution, as well as sign and magnitude of the exchange interaction between the two atoms. In contrast to typical $4f-3d$ bulk compounds, we find ferromagnetic coupling in the dimer