Oral History Interview: Flem A. Brumfield

This interview is one of a series conducted with former employees of the Huntington Owens-Illinois, Inc. glass bottle factory. Mr. Flem A. Brumfield was an employee at the Owens-Illinois glass factory. He discusses: his experiences working at the plant; unions and strikes; seniority at the plant; machines at the plant; men and women at the plant; management; a brief discussion on recycling; social activities at the plant; race relations at the plant; health problems at the plant; West Virginia and Huntington in general; the government; and other topics.https://mds.marshall.edu/oral_history/1486/thumbnail.jp

Migration-selection balance and local adaptation of mitochondrial haplotypes in Rufous-Collared Sparrows (Zonotrichia Capensis) along an elevational gradient

Variable selection pressures across heterogeneous landscapes can lead to local adaptation of populations. The extent of local adaptation depends on the interplay between natural selection and gene flow, but the nature of this relationship is complex. Gene flow can constrain local adaptation by eroding differentiation driven by natural selection, or local adaptation can itself constrain gene flow through selection against maladapted immigrants. Here we test for evidence that natural selection constrains gene flow among populations of a widespread passerine bird (Zonotrichia capensis) that are distributed along an elevational gradient in the Peruvian Andes. Using multilocus sequences and microsatellites screened in 142 individuals collected along a series of replicate transects, we found that mitochondrial gene flow was significantly reduced along elevational transects relative to latitudinal control transects. Nuclear gene flow, however, was not similarly reduced. Clines in mitochondrial haplotype frequency were strongly associated with transitions in environmental variables along the elevational transects, but this association was not observed for the nuclear markers. These results suggest that natural selection constrains mitochondrial gene flow along elevational gradients and that the mitonuclear discrepancy may be due to local adaptation of mitochondrial haplotypes. © 2009 The Society for the Study of Evolution

Historical diversification of birds in Northwestern South America: A molecular perspective on the role of vicariant events

Studies of South American biodiversity have identified several areas of endemism that may have enhanced historical diversification of South American organisms. Hypotheses concerning the derivation of birds in the Choco area of endemism in northwestern South America were evaluated using protein electrophoretic data from 14 taxonomically diverse species groups of birds. Nine of these groups demonstrated that the Choco area of endemism has a closer historical relationship to Central America than to Amazonia, a result that is consistent with phytogeographic evidence. Within species groups, genetic distances between cis-Andean (east of the Andes) and trans-Andean (west of the Andes) taxa are, on average, roughly twice that between Choco and Central American taxa. The genetic data are consistent with the hypotheses that the divergence of most cis-Andean and trans-Andean taxa was the result of either the Andean uplift fragmenting a once continuous Amazonian-Pacific population (Andean Uplift Hypothesis), the isolation of the two faunas in forest refugia on opposite sides of the Andes during arid climates (Forest Refugia Hypothesis), or dispersal of Amazonian forms directly across the Andes into the trans-Andean region (Across-Andes Dispersal Hypothesis). Disentangling these hypotheses is difficult due to the complexity of the Andean uplift and to the scant geologic and paleoclimatic information that elucidates diversification events in northwestern South America. Regarding the divergence of cis- and trans-Andean taxa, the genetic, geologic, and paleoclimatic data allow weak rejection of the Andean Uplift Hypothesis and weak support for the Forest Refugia and Andean Dispersal Hypotheses. The subsequent diversification of Choco and Central American taxa was the result of Pleistocene forest refugia, marine transgressions, or parapatric speciation

Genomic insights into adaptation to high-altitude environments

Elucidating the molecular genetic basis of adaptive traits is a central goal of evolutionary genetics. The cold, hypoxic conditions of high-altitude habitats impose severe metabolic demands on endothermic vertebrates, and understanding how high-altitude endotherms cope with the combined effects of hypoxia and cold can provide important insights into the process of adaptive evolution. The physiological responses to high-altitude stress have been the subject of over a century of research, and recent advances in genomic technologies have opened up exciting opportunities to explore the molecular genetic basis of adaptive physiological traits. Here, we review recent literature on the use of genomic approaches to study adaptation to high-altitude hypoxia in terrestrial vertebrates, and explore opportunities provided by newly developed technologies to address unanswered questions in high-altitude adaptation at a genomic scale. © 2012 Macmillan Publishers Limited All rights reserved

Adaptive processes drive ecomorphological convergent evolution in antwrens (Thamnophilidae)

© 2014 The Author(s). Phylogenetic niche conservatism (PNC) and convergence are contrasting evolutionary patterns that describe phenotypic similarity across independent lineages. Assessing whether and how adaptive processes give origin to these patterns represent a fundamental step toward understanding phenotypic evolution. Phylogenetic model-based approaches offer the opportunity not only to distinguish between PNC and convergence, but also to determine the extent that adaptive processes explain phenotypic similarity. The Myrmotherula complex in the Neotropical family Thamnophilidae is a polyphyletic group of sexually dimorphic small insectivorous forest birds that are relatively homogeneous in size and shape. Here, we integrate a comprehensive species-level molecular phylogeny of the Myrmotherula complex with morphometric and ecological data within a comparative framework to test whether phenotypic similarity is described by a pattern of PNC or convergence, and to identify evolutionary mechanisms underlying body size and shape evolution. We show that antwrens in the Myrmotherula complex represent distantly related clades that exhibit adaptive convergent evolution in body size and divergent evolution in body shape. Phenotypic similarity in the group is primarily driven by their tendency to converge toward smaller body sizes. Differences in body size and shape across lineages are associated to ecological and behavioral factors

Systematics of the obligate ant-following clade of antbirds (Aves: Passeriformes: Thamnophilidae)

© 2014 by the Wilson Ornithological Society. Results of a comprehensive molecular phylogeny of the family Thamnophilidae were consistent with earlier findings that almost all obligate army-ant-followers of the family form a monophyletic group that contains five well-supported clades and encompasses six currently recognized genera: Phaenostictus, Pithys, Willisornis, Gymnopithys, Rhegmatorhina, and Phlegopsis. A comparative analysis of seven suites of morphological, behavioral, and ecological traits within the context of the phylogeny reinforced the validity of five of these genera, but results for the sixth, Gymnopithys, were internally inconsistent and required the description of a new genus, Oneillornis

A Reference Genome For The Nectar-Robbing Black-Throated Flowerpiercer (Diglossa Brunneiventris)

Black-throated Flowerpiercers (Diglossa brunneiventris) are one species representing a phenotypically specialized group of tanagers (Thraupidae) that have hooked bills which allow them to feed by stealing nectar from the base of flowers. Members of the genus are widely distributed in montane regions from Mexico to northern Argentina, and previous studies of Diglossa have focused on their systematics, phylogenetics, and interesting natural history. Despite numerous studies of species within the genus, no genome assembly exists to represent these nectivorous tanagers. We described the assembly of a genome sequence representing a museum-vouchered, wild, female D. brunneiventris collected in Peru. By combining Pacific Biosciences Sequel long-read technology with 10x linked-read and reference-based scaffolding, we produced a 1.08 Gbp pseudochromosomal assembly including 600 scaffolds with a scaffold N50 of 67.3 Mbp, a scaffold L50 of 6, and a BUSCO completeness score of 95%. This new assembly improves representation of the diverse species that comprise the tanagers, improves on scaffold lengths and contiguity when compared to existing genomic resources for tanagers, and provides another avenue of research into the genetic basis of adaptations common to a nectivorous lifestyle among vertebrates

The utility of single nucleotide polymorphisms in inferences of population history

Single nucleotide polymorphisms (SNPs) represent the most widespread type of sequence variation in genomes, yet they have only emerged recently as valuable genetic markers for revealing the evolutionary history of populations. Their occurrence throughout the genome also makes them ideal for analyses of speciation and historical demography, especially in light of recent theory suggesting that many unlinked nuclear loci are needed to estimate population genetic parameters with statistical confidence. In spite of having lower variation compared with microsatellites, SNPs should make the comparison of genomic diversities and histories of different species (the core goal of comparative biogeography) more straightforward than has been possible with microsatellites. The most pervasive, but correctable, complication to SNP analysis is a bias towards analyzing only the most variable loci, an artifact that is usually introduced by the limited number of individuals used to screen initially for polymorphisms. Although the use of SNPs as markers in population studies is still new, innovative methods for SNP identification, automated screening, haplotype inference and statistical analysis might quickly make SNPs the marker of choice

Optical Communications Systems for NASA's Human Space Flight Missions

The Laser-Enhanced Mission Communications Navigation and Operational Services (LEMNOS) office at Goddard Space Flight Center (GSFC) manages two NASA optical communication related projects, the Orion EM-2 Optical Communications Terminal (O2O) and the Integrated Laser Communications Relay Demonstration (LCRD) Low-Earth Orbit (LEO) User Modem and Amplifier Terminal (ILLUMA-T) projects. The main goal of LEMNOS is the advancement and implementation of optical communications systems and technologies for NASA missions. The O2O mission is sponsored by NASA's Human Exploration and Operations (HEO) Mission Directorate. The O2O project will provide optical communications capability to the Orion series of spacecraft, starting with the demonstration of operational utility on EM-2. It will be the first time a human exploration mission will rely on optical communications for its high-bandwidth link. ILLUMA-T is sponsored by the Space Communications and Navigation (SCaN) Program Office. It is destined for the International Space Station (ISS) as an external payload attached to the Japanese Experiment Module - Exposed Facility (JEM-EF). The ILLUMA-T project is developing an optical communications user terminal to demonstrate high bandwidth data transfer between LEO and the ground through the geosynchronous LCRD relay. ILLUMA-T will be the first demonstration of a LEO user of the LCRD system, pointing and tracking from a moving spacecraft at LEO to GEO satellite and vice versa, end-to-end operational utility of optical communications, and 51 Mbps forward link to ISS from ground. Both projects are collaborations between GSFC, Massachusetts Institute of Technology " Lincoln Laboratory (MIT-LL), and a number of contractors

Optical Communication Activities Through the Laser-Enhanced Mission Communications Navigation and Operational Services (LEMNOS) Office

The Laser-Enhanced Mission Communications Navigation and Operational Services (LEMNOS) office at Goddard Space Flight Center (GSFC) manages two NASA optical communication related projects, the Orion EM-2 Optical Communications Terminal (O2O) and the Integrated Laser Communications Relay Demonstration (LCRD) Low-Earth Orbit (LEO) User Modem and Amplifier Terminal (ILLUMA-T) projects. The main goal of LEMNOS project is to implement optical communications technologies on NASA missions starting with demonstrations of operational utility on Orion EM-2 and the International Space Station