R script analysing variants described in the paper

The file contains R code that loads the data from the R package HardyWeinberg. Functions are called that analyse the data and reproduce the tables given in the paper

Power and false positive rate over thresholds and by population samples.

<p>The empirical power (dashed) and false positive rate (solid) are shown for a range of sibling versus unrelated LCL decision thresholds. In each plot, the indicated population sample is assumed in the calculations. Within each plot, the colored curves indicate the true population sample allele frequencies used to simulate individuals. Red signifies Vietnamese, orange African American, purple European American, blue Latino, and green Navajo. Similarly color-coded crosses indicate for each population sample pair.</p

LCL distributions for siblings and unrelated individuals by population samples.

<p>Each individual plot shows the distribution of LCLs for unrelated individuals (solid) and siblings (dashed). The dotted vertical lines indicate . The horizontal lines show the central 95% of observed values over genotypes. The true and assumed population samples are listed on the column and row headings, respectively. Plot coloring indicates distinguishability where red represents low and blue represents high .</p

<b> versus </b><b>.</b>

<p>The empirical distinguishability () for siblings and unrelated individuals is plotted against average gene diversity () for each population sample. Points are colored according to the true population sample where red signifies Vietnamese, orange African American, purple European American, blue Latino, and green Navajo.</p

Reference sample genotypes by location

File contains reference sample genotypes along with a reference location code for each sampl