A mutate-and-map protocol for inferring base pairs in structured RNA

Chemical mapping is a widespread technique for structural analysis of nucleic acids in which a molecule's reactivity to different probes is quantified at single-nucleotide resolution and used to constrain structural modeling. This experimental framework has been extensively revisited in the past decade with new strategies for high-throughput read-outs, chemical modification, and rapid data analysis. Recently, we have coupled the technique to high-throughput mutagenesis. Point mutations of a base-paired nucleotide can lead to exposure of not only that nucleotide but also its interaction partner. Carrying out the mutation and mapping for the entire system gives an experimental approximation of the molecules contact map. Here, we give our in-house protocol for this mutate-and-map strategy, based on 96-well capillary electrophoresis, and we provide practical tips on interpreting the data to infer nucleic acid structure.Comment: 22 pages, 5 figure

Reflexive Memory Authenticator: A Proposal for Effortless Renewable Biometrics

International audienceToday’s biometric authentication systems are still struggling with replay attacks and irrevocable stolen credentials. This paper introduces a biometric protocol that addresses such vulnerabilities. The approach prevents identity theft by being based on memory creation biometrics. It takes inspiration from two different authentication methods, eye biometrics and challenge systems, as well as a novel biometric feature: the pupil memory effect. The approach can be adjusted for arbitrary levels of security, and credentials can be revoked at any point with no loss to the user. The paper includes an analysis of its security and performance, and shows how it could be deployed and improved