A Sea Turtle Population Assessment for Florida\u27s Big Bend, Northeastern Gulf of Mexico

Coastal waters of Florida’s Big Bend, Gulf of Mexico (GOM) once supported one of the largest sea turtle fisheries in the United States. To fill an information gap in this region on abundance and distribution of sea turtles, we used vessel—based distance sampling and active capture methods to characterize current foraging aggregations near the St. Martins Marsh Aquatic Preserve. Over 10 sampling periods between 2012—2018, we completed 513 km of transects and recorded 819 turtles among 4 species—green turtle (Chelonia mydas, n = 624), Kemp’s ridley (Lepidochelys kempii, n = 147), loggerhead (Caretta caretta, n = 47), and a single hawksbill (Eretmochelys imbricata). Turtle densities in 4 study plots within the 200 km2 study site ranged from 57—221 immature green turtles/km2, 16—56 immature Kemp’s ridleys/km2, and 1—14 juvenile—to—adult loggerheads/km2. Of 200 green turtles captured, 67.5% showed skin tumors consistent with fibropapillomatosis, a frequency similar to that from urbanized estuaries of Florida’s east coast. The largest green turtles (\u3e 60 cm straight standard carapace length), abundant in the southern portion of our study area, are of note because this size class is uncommonly recorded within US territorial waters. Analyses of green turtle mtDNA haplotypes found contributions from rookeries in the western GOM, Mexican Caribbean, and Costa Rica. Although Big Bend protected areas were principally designed to conserve marine and coastal habitats, these regulatory zones have also effectively encompassed a hotspot for foraging sea turtles

Geographic patterns of genetic variation in a broadly distributed marine vertebrate: new insights into loggerhead turtle stock structure from expanded mitochondrial DNA sequences

Previous genetic studies have demonstrated that natal homing shapes the stock structure of marine turtle nesting populations. However, widespread sharing of common haplotypes based on short segments of the mitochondrial control region often limits resolution of the demographic connectivity of populations. Recent studies employing longer control region sequences to resolve haplotype sharing have focused on regional assessments of genetic structure and phylogeography. Here we synthesize available control region sequences for loggerhead turtles from the Mediterranean Sea, Atlantic, and western Indian Ocean basins. These data represent six of the nine globally significant regional management units (RMUs) for the species and include novel sequence data from Brazil, Cape Verde, South Africa and Oman. Genetic tests of differentiation among 42 rookeries represented by short sequences (380 bp haplotypes from 3,486 samples) and 40 rookeries represented by long sequences (~800 bp haplotypes from 3,434 samples) supported the distinction of the six RMUs analyzed as well as recognition of at least 18 demographically independent management units (MUs) with respect to female natal homing. A total of 59 haplotypes were resolved. These haplotypes belonged to two highly divergent global lineages, with haplogroup I represented primarily by CC-A1, CC-A4, and CC-A11 variants and haplogroup II represented by CC-A2 and derived variants. Geographic distribution patterns of haplogroup II haplotypes and the nested position of CC-A11.6 from Oman among the Atlantic haplotypes invoke recent colonization of the Indian Ocean from the Atlantic for both global lineages. The haplotypes we confirmed for western Indian Ocean RMUs allow reinterpretation of previous mixed stock analysis and further suggest that contemporary migratory connectivity between the Indian and Atlantic Oceans occurs on a broader scale than previously hypothesized. This study represents a valuable model for conducting comprehensive international cooperative data management and research in marine ecology

Genetic Structure Of Florida Green Turtle Rookeries As Indicated By Mitochondrial Dna Control Region Sequences

Green turtle (Chelonia mydas) nesting has increased dramatically in Florida over the past two decades, ranking the Florida nesting aggregation among the largest in the Greater Caribbean region. Individual beaches that comprise several hundred kilometers of Florida’s east coast and Keys support tens to thousands of nests annually. These beaches encompass natural to highly developed habitats, and the degree of demographic partitioning among rookeries was previously unresolved. We characterized the genetic structure of ten Florida rookeries from Cape Canaveral to the Dry Tortugas through analysis of 817 base pair mitochondrial DNA (mtDNA) control region sequences from 485 nesting turtles. Two common haplotypes, CM-A1.1 and CM-A3.1, accounted for 87 % of samples, and the haplotype frequencies were strongly partitioned by latitude along Florida’s Atlantic coast. Most genetic structure occurred between rookeries on either side of an apparent genetic break in the vicinity of the St. Lucie Inlet that separates Hutchinson Island and Jupiter Island, representing the finest scale at which mtDNA structure has been documented in marine turtle rookeries. Florida and Caribbean scale analyses of population structure support recognition of at least two management units: central eastern Florida and southern Florida. More thorough sampling and deeper sequencing are necessary to better characterize connectivity among Florida green turtle rookeries as well as between the Florida nesting aggregation and others in the Greater Caribbean region

Genetic Structure Of The Southeastern United States Loggerhead Turtle Nesting Aggregation: Evidence Of Additional Structure Within The Peninsular Florida Recovery Unit

The southeastern United States supports one of two large loggerhead turtle (Caretta caretta) nesting aggregations worldwide and is therefore critical to global conservation and recovery efforts for the species. Previous studies have established the presence of four demographically distinct nesting populations (management units) corresponding to beaches from (1) North Carolina through northeastern Florida, (2) peninsular Florida, (3) the Dry Tortugas, and (4) northwest Florida. Temporal and geographic genetic structure of the nesting aggregation was examined utilizing partial mitochondrial control region haplotype frequencies from 834 samples collected over the 2002 through 2008 nesting seasons from 19 beaches as well as previously published haplotype data. Most rookeries did not exhibit interannual genetic variation. However, the interannual variation detected did significantly impact the interpretation of spatial genetic structure in northeastern Florida. Based on pairwise FST comparisons, exact tests of population differentiation, and analysis of molecular variance, the present study upholds the distinctiveness of the four currently recognized management units and further supports recognition of discrete central eastern, southern (southeastern and southwestern), and central western Florida management units. Further subdivision may be warranted, but more intensive genetic sampling is required. In addition, tools such as telemetry and mark-recapture are needed to complement genetic data and overcome limitations of genetic markers in resolving loggerhead turtle rookery connectivity in the southeastern USA. © 2010 Springer-Verlag

Isolation And Characterization Of Tetranucleotide Microsatellites From The Leatherback Turtle (Dermochelys Coriacea)

The leatherback turtle (Dermochelys coriacea) is a globally endangered marine species. Numerous questions regarding life history and demographics that are of conservation interest remain and many of these can be addressed through the use of highly polymorphic nuclear markers. We describe primers and polymerase chain reaction conditions to amplify 19 tetranucleotide microsatellite loci from the leatherback turtle. The primers were tested on samples from 22 females that nested at Archie Carr National Wildlife Refuge, Melbourne Beach, Florida, USA. The primers developed in this study yielded an average of 9.4 alleles per locus (range of 5-19) and an average observed heterozygosity of 0.84 (range 0.36-1.00). These markers should prove useful in supplementing existing markers for individual and population level analyses. © Springer Science+Business Media B.V. 2011

Tetranucleotide Markers From The Loggerhead Sea Turtle (Caretta Caretta) And Their Cross-Amplification In Other Marine Turtle Species

The loggerhead sea turtle (Caretta caretta) is a federally threatened species and listed as endangered by the World Conservation Union (IUCN). We describe primers and polymerase chain reaction (PCR) conditions to amplify 11 novel tetranucleotide microsatellite loci from the loggerhead sea turtle. We tested primers using samples from 22 females that nested at Melbourne Beach, Florida (USA). Primer pairs yielded an average of 11.2 alleles per locus (range of 4-24), an average observed heterozygosity of 0.83 (range 0.59-0.96), and an average polymorphic information content of 0.80 (range 0.62-0.94). We also demonstrate the utility of these primers, in addition to primers for 15 loci previously described, for amplifying microsatellite loci in four additional species representing the two extant marine turtle families: olive ridley (Lepidochelys olivacea), hawksbill (Eretmochelys imbricata), green turtle (Chelonia mydas), and leatherback (Dermochelys coriacea). © 2008 Springer Science+Business Media B.V

Mexican Origins For The Texas Green Turtle Foraging Aggregation: A Cautionary Tale Of Incomplete Baselines And Poor Marker Resolution

The green turtle (Chelonia mydas) foraging aggregation along the Texas coast has increased dramatically in recent years, but the source populations for these turtles have not been adequately resolved. Previous mixed stock analysis (MSA) based on 490 base pair (bp) mitochondrial control region haplotypes suggested a large Florida contribution, but widespread sharing of common haplotypes among potential source populations and incomplete source population baseline data precluded precise assessment. To test the hypothesis that Texas turtles may represent proximal western Gulf of Mexico (GoM) nesting populations, we analyzed novel rookery samples from Rancho Nuevo, Tamaulipas, Mexico (RNMX) and conducted oceanic connectivity simulations. The RNMX samples yielded haplotypes CM-A1.1 and CM-A3.1 in frequencies not significantly different from those of the central eastern Florida nesting population. However, mitogenomic sequencing identified a diagnostic mitochondrial SNP (mtSNP) variant that is fixed in RNMX relative to the Florida CM-A1.1 lineage. Pairwise comparisons indicate that the Tamaulipas rookery represents a discrete population relative to those previously described in the northern Greater Caribbean, warranting recognition of a western GoM management unit (MU). Contrary to previous findings, the Florida populations were ruled out as major contributors to the Texas aggregation through screening of the mtSNP. Mixed stock analysis incorporating the mtSNP data suggested a western GoM origin for approximately 70% of the Texas foraging aggregation, with Quintana Roo contributing the majority of the remainder. Backtracking simulations within an ocean circulation model were broadly congruent with genetic results in indicating substantial probability of oceanic transport from Mexican rookeries to the Texas coast (68%) while also dismissing the possibility of transport from the eastern Florida rookeries (0%). The mixed stock analyses and backtracking simulations are consistent with previous hypotheses implicating oceanic dispersal followed by natal homing by neritic juveniles to explain juvenile green turtle distributions. In contrast to a pattern of stepping stone connectivity across the remaining northern Greater Caribbean, the Texas foraging aggregation was distinct from all others analyzed in the region, including one in the eastern GoM. This isolation highlights the significance of Texas as developmental habitat for the proposed western GoM MU and reiterates the importance of continued international cooperation to facilitate recovery of this stock. This study also underscores the importance of satisfying underlying assumptions of mixed stock analysis in order to make robust inferences of connectivity

Tetranucleotide Microsatellite Loci From The Endangered Green Turtle (Chelonia Mydas)

We describe isolation and characterization of 20 polymorphic tetranucleotide loci from the green turtle (Chelonia mydas). We identified an average of 12.5 alleles per locus based on screening of 31 individuals foraging in the Indian River Lagoon, Florida, USA. Observed heterozygosity ranged from 0.53 to 1.00, with a mean of 0.85. This microsatellite suite has a combined non-exclusion probability of identity of 2.45 × 10-28. These markers will complement those already available for green turtles in individual-based as well as population level genetic analyses. © 2012 Springer Science+Business Media B.V