Self Trapping of a Single Bacterium in its Own Chemoattractant

Bacteria (e.g. E. Coli) are very sensitive to certain chemoattractants (e.g. asparate) which they themselves produce. This leads to chemical instabilities in a uniform population. We discuss here the different case of a single bacterium, following the general scheme of Brenner, Levitov and Budrene. We show that in one and two dimensions (in a capillary or in a thin film) the bacterium can become self-trapped in its cloud of attractant. This should occur if a certain coupling constant $g$ is larger than unity. We then estimate the reduced diffusion D_eff of the bacterium in the strong coupling limit, and find D_eff ~ 1/g.Comment: 4 pages, absolutely no figure

Experimental and numerical study of error fields in the CNT stellarator

Sources of error fields were indirectly inferred in a stellarator by reconciling computed and numerical flux surfaces. Sources considered so far include the displacements and tilts (but not the deformations, yet) of the four circular coils featured in the simple CNT stellarator. The flux surfaces were measured by means of an electron beam and phosphor rod, and were computed by means of a Biot-Savart field-line tracing code. If the ideal coil locations and orientations are used in the computation, agreement with measurements is poor. Discrepancies are ascribed to errors in the positioning and orientation of the in-vessel interlocked coils. To that end, an iterative numerical method was developed. A Newton-Raphson algorithm searches for the coils' displacements and tilts that minimize the discrepancy between the measured and computed flux surfaces. This method was verified by misplacing and tilting the coils in a numerical model of CNT, calculating the flux surfaces that they generated, and testing the algorithm's ability to deduce the coils' displacements and tilts. Subsequently, the numerical method was applied to the experimental data, arriving at a set of coil displacements whose resulting field errors exhibited significantly improved quantitative and qualitative agreement with experimental results.Comment: Special Issue on the 20th International Stellarator-Heliotron Worksho

Shear-dependent apparent slip on hydrophobic surfaces: The Mattress Model

Recent experiments (Zhu & Granick (2001) Phys. Rev. Lett. 87 096105) have measured a large shear dependent fluid slip at partially wetting fluid-solid surfaces. We present a simple model for such slip, motivated by the recent observations of nanobubbles on hydrophobic surfaces. The model considers the dynamic response of bubbles to change in hydrodynamic pressure due to the oscillation of a solid surface. Both the compression and diffusion of gas in the bubbles decrease the force on the oscillating surface by a ``leaking mattress'' effect, thereby creating an apparent shear-dependent slip. With bubbles similar to those observed by atomic force microscopy to date, the model is found to lead to force decreases consistent with the experimental measurements of Zhu & Granick

Applications of BGP-reflection functors: isomorphisms of cluster algebras

Given a symmetrizable generalized Cartan matrix $A$, for any index $k$, one can define an automorphism associated with $A,$ of the field $\mathbf{Q}(u_1, >..., u_n)$ of rational functions of $n$ independent indeterminates $u_1,..., u_n.$ It is an isomorphism between two cluster algebras associated to the matrix $A$ (see section 4 for precise meaning). When $A$ is of finite type, these isomorphisms behave nicely, they are compatible with the BGP-reflection functors of cluster categories defined in [Z1, Z2] if we identify the indecomposable objects in the categories with cluster variables of the corresponding cluster algebras, and they are also compatible with the "truncated simple reflections" defined in [FZ2, FZ3]. Using the construction of preprojective or preinjective modules of hereditary algebras by Dlab-Ringel [DR] and the Coxeter automorphisms (i.e., a product of these isomorphisms), we construct infinitely many cluster variables for cluster algebras of infinite type and all cluster variables for finite types.Comment: revised versio

Sonoluminescing air bubbles rectify argon

The dynamics of single bubble sonoluminescence (SBSL) strongly depends on the percentage of inert gas within the bubble. We propose a theory for this dependence, based on a combination of principles from sonochemistry and hydrodynamic stability. The nitrogen and oxygen dissociation and subsequent reaction to water soluble gases implies that strongly forced air bubbles eventually consist of pure argon. Thus it is the partial argon (or any other inert gas) pressure which is relevant for stability. The theory provides quantitative explanations for many aspects of SBSL.Comment: 4 page

Noise compliant macromodel synthesis for RF and Mixed-Signal applications

This paper proposes a compact synthesis approach for reduced-order behavioral macromodels of linear circuit blocks for RF and Mixed-Signal design. The proposed approach revitalizes the classical synthesis of lumped linear and timeinvariant multiport networks by reactance extraction, which is here exploited to obtain reduced-order equivalent SPICE netlists that can be used in any type of system-level simulations, including transient and noise analysis. The effectiveness of proposed approach is demonstrated on a real design applicatio

Entropic particle transport: higher order corrections to the Fick-Jacobs diffusion equation

Transport of point-size Brownian particles under the influence of a constant and uniform force field through a three-dimensional channel with smoothly varying periodic cross-section is investigated. Here, we employ an asymptotic analysis in the ratio between the difference of the widest and the most narrow constriction divided through the period length of the channel geometry. We demonstrate that the leading order term is equivalent to the Fick-Jacobs approximation. By use of the higher order corrections to the probability density we derive an expression for the spatially dependent diffusion coefficient D(x) which substitutes the constant diffusion coefficient present in the common Fick-Jacobs equation. In addition, we show that in the diffusion dominated regime the average transport velocity is obtained as the product of the zeroth-order Fick-Jacobs result and the expectation value of the spatially dependent diffusion coefficient . The analytic findings are corroborated with the precise numerical results of a finite element calculation of the Smoluchowski diffusive particle dynamics occurring in a reflection symmetric sinusoidal-shaped channel.Comment: 9 pages, 3 figure

Dispersion and collapse of wave maps

We study numerically the Cauchy problem for equivariant wave maps from 3+1 Minkowski spacetime into the 3-sphere. On the basis of numerical evidence combined with stability analysis of self-similar solutions we formulate two conjectures. The first conjecture states that singularities which are produced in the evolution of sufficiently large initial data are approached in a universal manner given by the profile of a stable self-similar solution. The second conjecture states that the codimension-one stable manifold of a self-similar solution with exactly one instability determines the threshold of singularity formation for a large class of initial data. Our results can be considered as a toy-model for some aspects of the critical behavior in formation of black holes.Comment: 14 pages, Latex, 9 eps figures included, typos correcte