Global Patterns and Controls of Nutrient Immobilization On Decomposing Cellulose In Riverine Ecosystems

Microbes play a critical role in plant litter decomposition and influence the fate of carbon in rivers and riparian zones. When decomposing low-nutrient plant litter, microbes acquire nitrogen (N) and phosphorus (P) from the environment (i.e., nutrient immobilization), and this process is potentially sensitive to nutrient loading and changing climate. Nonetheless, environmental controls on immobilization are poorly understood because rates are also influenced by plant litter chemistry, which is coupled to the same environmental factors. Here we used a standardized, low-nutrient organic matter substrate (cotton strips) to quantify nutrient immobilization at 100 paired stream and riparian sites representing 11 biomes worldwide. Immobilization rates varied by three orders of magnitude, were greater in rivers than riparian zones, and were strongly correlated to decomposition rates. In rivers, P immobilization rates were controlled by surface water phosphate concentrations, but N immobilization rates were not related to inorganic N. The N:P of immobilized nutrients was tightly constrained to a molar ratio of 10:1 despite wide variation in surface water N:P. Immobilization rates were temperature-dependent in riparian zones but not related to temperature in rivers. However, in rivers nutrient supply ultimately controlled whether microbes could achieve the maximum expected decomposition rate at a given temperature

Effects of exotic riparian vegetation on leaf breakdown by shredders: a tropical-temperate comparison

Displacement of riparian vegetation by exotic species is a global phenomenon with the potential to affect leaf breakdown rates by shredders. We predicted that exotic riparian vegetation would have a greater effect on leaf breakdown by temperate than by tropical shredders because temperate shredders usually feed on a limited range of generally palatable leaves, whereas tropical shredders are naturally exposed to a higher variety of leaves, many of them unpalatable. We tested 3 hypotheses with common shredder assemblages from tropical Queensland and temperate Tasmania (Australia): 1) tropical shredders are equally efficient at breaking down native and exotic vegetation, whereas temperate shredders are less efficient at breaking down exotic vegetation; 2) tropical shredders are more generalist in their leaf choices than temperate shredders; and 3) shredders are more generalist in their leaf choices among exotic than among native vegetation. Hypothesis 1 was not supported. Caddisflies (tropical or temperate) were able to consume both native and exotic leaves, whereas non-caddisfly shredders fed only on native leaves, a result suggesting that shredding capacity depends on the identity of the shredder species or their phylogenetic position rather than on their origin. Hypothesis 2 was supported. Tropical shredders fed on various leaf types, whereas most temperate shredders chose one leaf type and fed on it for the duration of the experiment. Hypothesis 3 was not supported. Specificity of shredder choices did not differ between native and exotic leaves, a result suggesting that shredding behavior is not flexible, regardless of the leaf litter available. Thus, invasive riparian plants may affect leaf breakdown by shredders, particularly in temperate streams, but effects may vary depending on assemblage composition, the nature and timing of litterfall, and interactions with climate.Peer Reviewe

Effects of a predatory fish on a tropical detritus-based food web

In contrast to that for grazing systems, relatively little information exists for trophic cascades in detritus-based stream food webs, which are predominant in forested headwater streams. Predator–prey interactions are thought to be weak in these systems, but studies are very scarce, their results are equivocal, and they do not separate the effect of direct consumption from a behavioural response of shredders. We examined the effect of predatory fish on leaf litter breakdown in headwater tropical Australian streams at three levels: (1) the behavioural response of shredder species to predator presence as indicated by chemical cues; (2) the rates of leaf breakdown resulting from shredder activity; and (3) the relationship between shredder species richness and leaf breakdown rates. Our results suggest that predatory fish can have a trait-mediated effect on detritus-based food webs in streams, by reducing consumer activity. We identified reductions in short-term overall activity in response to the presence of predatory fish cues, comparable to those found for grazers. We also observed a visible, albeit statistically non-significant, reduction in consumption rates. Shredder species richness did not affect leaf breakdown rates, and fish presence did not modify this relationship or the differences in breakdown rates among species, suggesting that the overall reduction in leaf breakdown caused by fish presence is due to a reduction in activity in every species. Thus, our laboratory studies have shown that there can be a behavioural basis for trait-mediated trophic cascades linked to fish presence in detrital food webs in streams. However, the strength of fish effects depends on environmental circumstances, and field studies of litter breakdown in streams with and without predatory fish are required if we are to elucidate the ecological significance of our observations

Treatment patterns and outcomes of 2310 patients with secondary acute myeloid leukemia : a PETHEMA registry study

This study was supported in part by the Jazz Pharmaceuticals and Cooperative Research Thematic Network (RTICC) grant RD12/0036/014 (ISCIII and ERDF)

Networking for advanced molecular diagnosis in acute myeloid leukemia patients is possible: the PETHEMA NGS-AML project

Next-Generation Sequencing has recently been introduced to efficiently and simultaneously detect genetic variations in acute myeloid leukemia. However, its implementation in the clinical routine raises new challenges focused on the diversity of assays and variant reporting criteria. To overcome this challenge, the PETHEMA group established a nationwide network of reference laboratories aimed to deliver molecular results in the clinics. We report the technical cross-validation results for next-generation sequencing panel genes during the standardization process and the clinical validation in 823 samples of 751 patients with newly diagnosed or refractory/relapse acute myeloid leukemia. Two cross-validation rounds were performed in seven nationwide reference laboratories in order to reach a consensus regarding quality metrics criteria and variant reporting. In the pre-standardization cross-validation round, an overall concordance of 60.98% was obtained with a great variability in selected genes and conditions across laboratories. After consensus of relevant genes and optimization of quality parameters the overall concordance rose to 85.57% in the second cross-validation round. We show that a diagnostic network with harmonized next-generation sequencing analysis and reporting in seven experienced laboratories is feasible in the context of a scientific group

Networking for advanced molecular diagnosis in acute myeloid leukemia patients is possible: the PETHEMA NGS-AML project

Next-Generation Sequencing has recently been introduced to efficiently and simultaneously detect genetic variations in acute myeloid leukemia. However, its implementation in the clinical routine raises new challenges focused on the diversity of assays and variant reporting criteria. To overcome this challenge, the PETHEMA group established a nationwide network of reference laboratories aimed to deliver molecular results in the clinics. We report the technical cross-validation results for next-generation sequencing panel genes during the standardization process and the clinical validation in 823 samples of 751 patients with newly diagnosed or refractory/relapse acute myeloid leukemia. Two cross-validation rounds were performed in seven nationwide reference laboratories in order to reach a consensus regarding quality metrics criteria and variant reporting. In the pre-standardization cross-validation round, an overall concordance of 60.98% was obtained with a great variability in selected genes and conditions across laboratories. After consensus of relevant genes and optimization of quality parameters the overall concordance rose to 85.57% in the second cross-validation round. We show that a diagnostic network with harmonized next-generation sequencing analysis and reporting in seven experienced laboratories is feasible in the context of a scientific group