A moment based approach to the dynamical solution of the Kuramoto model

We examine the dynamics of the Kuramoto model with a new analytical approach. By defining an appropriate set of moments the dynamical equations can be exactly closed. We discuss some applications of the formalism like the existence of an effective Hamiltonian for the dynamics. We also show how this approach can be used to numerically investigate the dynamical behavior of the model without finite size effects.Comment: 6 pages, 5 figures, Revtex file, to appear in J. Phys.

Chapman-Enskog method and synchronization of globally coupled oscillators

The Chapman-Enskog method of kinetic theory is applied to two problems of synchronization of globally coupled phase oscillators. First, a modified Kuramoto model is obtained in the limit of small inertia from a more general model which includes ``inertial'' effects. Second, a modified Chapman-Enskog method is used to derive the amplitude equation for an O(2) Takens-Bogdanov bifurcation corresponding to the tricritical point of the Kuramoto model with a bimodal distribution of oscillator natural frequencies. This latter calculation shows that the Chapman-Enskog method is a convenient alternative to normal form calculations.Comment: 7 pages, 2-column Revtex, no figures, minor change

Chaotic dynamics of electric-field domains in periodically driven superlattices

Self-sustained time-dependent current oscillations under dc voltage bias have been observed in recent experiments on n-doped semiconductor superlattices with sequential resonant tunneling. The current oscillations are caused by the motion and recycling of the domain wall separating low- and high-electric- field regions of the superlattice, as the analysis of a discrete drift model shows and experimental evidence supports. Numerical simulation shows that different nonlinear dynamical regimes of the domain wall appear when an external microwave signal is superimposed on the dc bias and its driving frequency and driving amplitude vary. On the frequency - amplitude parameter plane, there are regions of entrainment and quasiperiodicity forming Arnol'd tongues. Chaos is demonstrated to appear at the boundaries of the tongues and in the regions where they overlap. Coexistence of up to four electric-field domains randomly nucleated in space is detected under ac+dc driving.Comment: 9 pages, LaTex, RevTex. 12 uuencoded figures (1.8M) should be requested by e-mail from the autho

Partially and Fully Frustrated Coupled Oscillators With Random Pinning Fields

We have studied two specific models of frustrated and disordered coupled Kuramoto oscillators, all driven with the same natural frequency, in the presence of random external pinning fields. Our models are structurally similar, but differ in their degree of bond frustration and in their finite size ground state properties (one has random ferro- and anti-ferromagnetic interactions; the other has random chiral interactions). We have calculated the equilibrium properties of both models in the thermodynamic limit using the replica method, with emphasis on the role played by symmetries of the pinning field distribution, leading to explicit predictions for observables, transitions, and phase diagrams. For absent pinning fields our two models are found to behave identically, but pinning fields (provided with appropriate statistical properties) break this symmetry. Simulation data lend satisfactory support to our theoretical predictions.Comment: 37 pages, 7 postscript figure

Symmetric hyperbolic systems for a large class of fields in arbitrary dimension

Symmetric hyperbolic systems of equations are explicitly constructed for a general class of tensor fields by considering their structure as r-fold forms. The hyperbolizations depend on 2r-1 arbitrary timelike vectors. The importance of the so-called "superenergy" tensors, which provide the necessary symmetric positive matrices, is emphasized and made explicit. Thereby, a unified treatment of many physical systems is achieved, as well as of the sometimes called "higher order" systems. The characteristics of these symmetric hyperbolic systems are always physical, and directly related to the null directions of the superenergy tensor, which are in particular principal null directions of the tensor field solutions. Generic energy estimates and inequalities are presented too.Comment: 24 pages, no figure

Stability of mode-locked kinks in the ac driven and damped sine-Gordon lattice

Kink dynamics in the underdamped and strongly discrete sine-Gordon lattice that is driven by the oscillating force is studied. The investigation is focused mostly on the properties of the mode-locked states in the {\it overband} case, when the driving frequency lies above the linear band. With the help of Floquet theory it is demonstrated that the destabilizing of the mode-locked state happens either through the Hopf bifurcation or through the tangential bifurcation. It is also observed that in the overband case the standing mode-locked kink state maintains its stability for the bias amplitudes that are by the order of magnitude larger than the amplitudes in the low-frequency case.Comment: To appear in Springer Series on Wave Phenomena, special volume devoted to the LENCOS'12 conference; 6 figure

Closure of the Monte Carlo dynamical equations in the spherical Sherrington-Kirkpatrick model

We study the analytical solution of the Monte Carlo dynamics in the spherical Sherrington-Kirkpatrick model using the technique of the generating function. Explicit solutions for one-time observables (like the energy) and two-time observables (like the correlation and response function) are obtained. We show that the crucial quantity which governs the dynamics is the acceptance rate. At zero temperature, an adiabatic approximation reveals that the relaxational behavior of the model corresponds to that of a single harmonic oscillator with an effective renormalized mass.Comment: Uuencoded file including: REVTEX (33 pages) and 7 figures (PostScript)

Phase Diagram for the Winfree Model of Coupled Nonlinear Oscillators

In 1967 Winfree proposed a mean-field model for the spontaneous synchronization of chorusing crickets, flashing fireflies, circadian pacemaker cells, or other large populations of biological oscillators. Here we give the first bifurcation analysis of the model, for a tractable special case. The system displays rich collective dynamics as a function of the coupling strength and the spread of natural frequencies. Besides incoherence, frequency locking, and oscillator death, there exist novel hybrid solutions that combine two or more of these states. We present the phase diagram and derive several of the stability boundaries analytically.Comment: 4 pages, 4 figure

Electrically tunable GHz oscillations in doped GaAs-AlAs superlattices

Tunable oscillatory modes of electric-field domains in doped semiconductor superlattices are reported. The experimental investigations demonstrate the realization of tunable, GHz frequencies in GaAs-AlAs superlattices covering the temperature region from 5 to 300 K. The orgin of the tunable oscillatory modes is determined using an analytical and a numerical modeling of the dynamics of domain formation. Three different oscillatory modes are found. Their presence depends on the actual shape of the drift velocity curve, the doping density, the boundary condition, and the length of the superlattice. For most bias regions, the self-sustained oscillations are due to the formation, motion, and recycling of the domain boundary inside the superlattice. For some biases, the strengths of the low and high field domain change periodically in time with the domain boundary being pinned within a few quantum wells. The dependency of the frequency on the coupling leads to the prediction of a new type of tunable GHz oscillator based on semiconductor superlattices.Comment: Tex file (20 pages) and 16 postscript figure

Genome-Wide Studies of Histone Demethylation Catalysed by the Fission Yeast Homologues of Mammalian LSD1

In order to gain a more global view of the activity of histone demethylases, we report here genome-wide studies of the fission yeast SWIRM and polyamine oxidase (PAO) domain homologues of mammalian LSD1. Consistent with previous work we find that the two S. pombe proteins, which we name Swm1 and Swm2 (after SWIRM1 and SWIRM2), associate together in a complex. However, we find that this complex specifically demethylates lysine 9 in histone H3 (H3K9) and both up- and down-regulates expression of different groups of genes. Using chromatin-immunoprecipitation, to isolate fragments of chromatin containing either H3K4me2 or H3K9me2, and DNA microarray analysis (ChIP-chip), we have studied genome-wide changes in patterns of histone methylation, and their correlation with gene expression, upon deletion of the swm1+ gene. Using hyper-geometric probability comparisons we uncover genetic links between lysine-specific demethylases, the histone deacetylase Clr6, and the chromatin remodeller Hrp1. The data presented here demonstrate that in fission yeast the SWIRM/PAO domain proteins Swm1 and Swm2 are associated in complexes that can remove methyl groups from lysine 9 methylated histone H3. In vitro, we show that bacterially expressed Swm1 also possesses lysine 9 demethylase activity. In vivo, loss of Swm1 increases the global levels of both H3K9me2 and H3K4me2. A significant accumulation of H3K4me2 is observed at genes that are up-regulated in a swm1 deletion strain. In addition, H3K9me2 accumulates at some genes known to be direct Swm1/2 targets that are down-regulated in the swm1¿ strain. The in vivo data indicate that Swm1 acts in concert with the HDAC Clr6 and the chromatin remodeller Hrp1 to repress gene expression. In addition, our in vitro analyses suggest that the H3K9 demethylase activity requires an unidentified post-translational modification to allow it to act. Thus, our results highlight complex interactions between histone demethylase, deacetylase and chromatin remodelling activities in the regulation of gene expression