Relaying: An Intercropping Approach to the Co-culture of Crawfish and Rice (Bulletin #862)

This study was designed to examine the biological and economic efficacy of relaying crawfish into a growing rice crop in an intercropping manner.https://digitalcommons.lsu.edu/agcenter_bulletins/1041/thumbnail.jp

Cypress: A High Yielding, High Quality Long-Grain Rice Variety

Cypress is a high-yielding, early-maturing, semidwarf, long-grain rice variety with excellent grain quality. This bulletin includes information on the history, characteristics, cultural management and pest reaction of Cypress.https://digitalcommons.lsu.edu/agcenter_bulletins/1011/thumbnail.jp

Genomic Diversity and Introgression in O. sativa Reveal the Impact of Domestication and Breeding on the Rice Genome

The domestication of Asian rice (Oryza sativa) was a complex process punctuated by episodes of introgressive hybridization among and between subpopulations. Deep genetic divergence between the two main varietal groups (Indica and Japonica) suggests domestication from at least two distinct wild populations. However, genetic uniformity surrounding key domestication genes across divergent subpopulations suggests cultural exchange of genetic material among ancient farmers.In this study, we utilize a novel 1,536 SNP panel genotyped across 395 diverse accessions of O. sativa to study genome-wide patterns of polymorphism, to characterize population structure, and to infer the introgression history of domesticated Asian rice. Our population structure analyses support the existence of five major subpopulations (indica, aus, tropical japonica, temperate japonica and GroupV) consistent with previous analyses. Our introgression analysis shows that most accessions exhibit some degree of admixture, with many individuals within a population sharing the same introgressed segment due to artificial selection. Admixture mapping and association analysis of amylose content and grain length illustrate the potential for dissecting the genetic basis of complex traits in domesticated plant populations.Genes in these regions control a myriad of traits including plant stature, blast resistance, and amylose content. These analyses highlight the power of population genomics in agricultural systems to identify functionally important regions of the genome and to decipher the role of human-directed breeding in refashioning the genomes of a domesticated species