Spatial fluctuations of a surviving particle in the trapping reaction

We consider the trapping reaction, $A+B\to B$, where $A$ and $B$ particles have a diffusive dynamics characterized by diffusion constants $D_A$ and $D_B$. The interaction with $B$ particles can be formally incorporated in an effective dynamics for one $A$ particle as was recently shown by Bray {\it et al}. [Phys. Rev. E {\bf 67}, 060102 (2003)]. We use this method to compute, in space dimension $d=1$, the asymptotic behaviour of the spatial fluctuation, $^{1/2}$, for a surviving $A$ particle in the perturbative regime, $D_A/D_B\ll 1$, for the case of an initially uniform distribution of $B$ particles. We show that, for $t\gg 1$, $^{1/2} \propto t^{\phi}$ with $\phi=1/4$. By contrast, the fluctuations of paths constrained to return to their starting point at time $t$ grow with the larger exponent 1/3. Numerical tests are consistent with these predictions.Comment: 10 pages, 5 figure

Biological activities of alkaloids: From toxicology to pharmacology

Plants produce many secondary metabolites, which reveal biological activity [...]

Random Networks with Tunable Degree Distribution and Clustering

We present an algorithm for generating random networks with arbitrary degree distribution and Clustering (frequency of triadic closure). We use this algorithm to generate networks with exponential, power law, and poisson degree distributions with variable levels of clustering. Such networks may be used as models of social networks and as a testable null hypothesis about network structure. Finally, we explore the effects of clustering on the point of the phase transition where a giant component forms in a random network, and on the size of the giant component. Some analysis of these effects is presented.Comment: 9 pages, 13 figures corrected typos, added two references, reorganized reference

Perturbation theory for the one-dimensional trapping reaction

We consider the survival probability of a particle in the presence of a finite number of diffusing traps in one dimension. Since the general solution for this quantity is not known when the number of traps is greater than two, we devise a perturbation series expansion in the diffusion constant of the particle. We calculate the persistence exponent associated with the particle's survival probability to second order and find that it is characterised by the asymmetry in the number of traps initially positioned on each side of the particle.Comment: 18 pages, no figures. Uses IOP Latex clas

Dyck Paths, Motzkin Paths and Traffic Jams

It has recently been observed that the normalization of a one-dimensional out-of-equilibrium model, the Asymmetric Exclusion Process (ASEP) with random sequential dynamics, is exactly equivalent to the partition function of a two-dimensional lattice path model of one-transit walks, or equivalently Dyck paths. This explains the applicability of the Lee-Yang theory of partition function zeros to the ASEP normalization. In this paper we consider the exact solution of the parallel-update ASEP, a special case of the Nagel-Schreckenberg model for traffic flow, in which the ASEP phase transitions can be intepreted as jamming transitions, and find that Lee-Yang theory still applies. We show that the parallel-update ASEP normalization can be expressed as one of several equivalent two-dimensional lattice path problems involving weighted Dyck or Motzkin paths. We introduce the notion of thermodynamic equivalence for such paths and show that the robustness of the general form of the ASEP phase diagram under various update dynamics is a consequence of this thermodynamic equivalence.Comment: Version accepted for publicatio

Charting the value and limits of other effective conservation measures (OECMs) for marine conservation: A Delphi study

Other effective conservation measures (OECMs) will play an important role in the Post-2020 Global Biodiversity Framework as a way for governments to achieve “30 × 30” (30% protection of land and oceans by 2030). However, the policy tool remains relatively new, is expanding from multiple perspectives, and requires clarification. We conducted a Delphi study – a structured technique designed to elicit the insights of a panel of experts – to chart the value and limits of OECMs for marine conservation. Results of the Delphi reveal a high degree of consensus on several core areas of this emerging policy tool. Experts agreed that OECMs can advance equitable and effective conservation. Realizing these opportunities will require strengthening local and Indigenous rights and prioritizing principles of social equity. The panel also agreed on five key challenges, ranging from ensuring that the burden to prove effectiveness does not fall to local communities to securing adequate resources to support OECMs. In contrast, no consensus was reached on how to measure the effectiveness of OECMs, highlighting the need to develop shared monitoring guidelines. Taken together, these findings outline a clear policy and research agenda to support the contributions of OECMs towards equitable, effective, and enduring conservation

Nonequilibrium stationary states and equilibrium models with long range interactions

It was recently suggested by Blythe and Evans that a properly defined steady state normalisation factor can be seen as a partition function of a fictitious statistical ensemble in which the transition rates of the stochastic process play the role of fugacities. In analogy with the Lee-Yang description of phase transition of equilibrium systems, they studied the zeroes in the complex plane of the normalisation factor in order to find phase transitions in nonequilibrium steady states. We show that like for equilibrium systems, the ``densities'' associated to the rates are non-decreasing functions of the rates and therefore one can obtain the location and nature of phase transitions directly from the analytical properties of the ``densities''. We illustrate this phenomenon for the asymmetric exclusion process. We actually show that its normalisation factor coincides with an equilibrium partition function of a walk model in which the ``densities'' have a simple physical interpretation.Comment: LaTeX, 23 pages, 3 EPS figure

Stochastic Ballistic Annihilation and Coalescence

We study a class of stochastic ballistic annihilation and coalescence models with a binary velocity distribution in one dimension. We obtain an exact solution for the density which reveals a universal phase diagram for the asymptotic density decay. By universal we mean that all models in the class are described by a single phase diagram spanned by two reduced parameters. The phase diagram reveals four regimes, two of which contain the previously studied cases of ballistic annihilation. The two new phases are a direct consequence of the stochasticity. The solution is obtained through a matrix product approach and builds on properties of a q-deformed harmonic oscillator algebra.Comment: 4 pages RevTeX, 3 figures; revised version with some corrections, additional discussion and in RevTeX forma

The Grand-Canonical Asymmetric Exclusion Process and the One-Transit Walk

The one-dimensional Asymmetric Exclusion Process (ASEP) is a paradigm for nonequilibrium dynamics, in particular driven diffusive processes. It is usually considered in a canonical ensemble in which the number of sites is fixed. We observe that the grand-canonical partition function for the ASEP is remarkably simple. It allows a simple direct derivation of the asymptotics of the canonical normalization in various phases and of the correspondence with One-Transit Walks recently observed by Brak et.al.Comment: Published versio

Dynamic Singularities in Cooperative Exclusion

We investigate cooperative exclusion, in which the particle velocity can be an increasing function of the density. Within a hydrodynamic theory, an initial density upsteps and downsteps can evolve into: (a) shock waves, (b) continuous compression or rarefaction waves, or (c) a mixture of shocks and continuous waves. These unusual phenomena arise because of an inflection point in the current versus density relation. This anomaly leads to a group velocity that can either be an increasing or a decreasing function of the density on either side of these wave singularities.Comment: 4 pages, 4 figures, 2 column revtex 4-1 format; version 2: substantially rewritten and put in IOP format, mail results unchanged; version 3: minor changes, final version for publication in JSTA