221 research outputs found
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Notations and conventions in molecular spectroscopy: part 2. Symmetry notation
The field of Molecular Spectroscopy was surveyed in order to determine a set of
conventions and symbols which are in common use in the spectroscopic literature. This
document, which is Part 2 in a series, establishes the notations and conventions used for the
description of symmetry in rigid molecules, using the Schoenflies notation. It deals firstly
with the symmetry operators of the molecular point groups (also drawing attention to the
difference between symmetry operators and elements). The conventions and notations of the
molecular point groups are then established, followed by those of the representations of these
groups as used in molecular spectroscopy. Further parts will follow, dealing inter alia with
permutation and permutation-inversion symmetry notation, vibration-rotation spectroscopy
and electronic spectroscopy
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Notations and conventions in molecular spectroscopy: part 1. General spectroscopic notation
The field of Molecular Spectroscopy was surveyed in order to determine a set of
conventions and symbols which are in common use in the spectroscopic literature. This
document, which is Part I in a series, establishes the notations and conventions used for
general spectroscopic notations and deals with quantum mechanics, quantum numbers
(vibrational states, angular momentum and energy levels), spectroscopic transitions, and
miscellaneous notations (e.g. spectroscopic terms). Further parts will follow, dealing inter
alia with symmetry notation, permutation and permutation-inversion symmetry notation,
vibration-rotation spectroscopy and electronic spectroscopy
Infectious disease and health systems modelling for local decision making to control neglected tropical diseases
Most neglected tropical diseases (NTDs) have complex life cycles and are challenging to control. The â2020 goalsâ of control and elimination as a public health programme for a number of NTDs are the subject of significant international efforts and investments. Beyond 2020 there will be a drive to maintain these gains and to push for true local elimination of transmission. However, these diseases are affected by variations in vectors, human demography, access to water and sanitation, access to interventions and local health systems. We therefore argue that there will be a need to develop local quantitative expertise to support elimination efforts. If available now, quantitative analyses would provide updated estimates of the burden of disease, assist in the design of locally appropriate control programmes, estimate the effectiveness of current interventions and support âreal-timeâ updates to local operations. Such quantitative tools are increasingly available at an international scale for NTDs, but are rarely tailored to local scenarios. Localised expertise not only provides an opportunity for more relevant analyses, but also has a greater chance of developing positive feedback between data collection and analysis by demonstrating the value of data. This is essential as rational program design relies on good quality data collection. It is also likely that if such infrastructure is provided for NTDs there will be an additional impact on the health system more broadly. Locally tailored quantitative analyses can help achieve sustainable and effective control of NTDs, but also underpin the development of local health care systems
Positron-molecule interactions: resonant attachment, annihilation, and bound states
This article presents an overview of current understanding of the interaction
of low-energy positrons with molecules with emphasis on resonances, positron
attachment and annihilation. Annihilation rates measured as a function of
positron energy reveal the presence of vibrational Feshbach resonances (VFR)
for many polyatomic molecules. These resonances lead to strong enhancement of
the annihilation rates. They also provide evidence that positrons bind to many
molecular species. A quantitative theory of VFR-mediated attachment to small
molecules is presented. It is tested successfully for selected molecules (e.g.,
methyl halides and methanol) where all modes couple to the positron continuum.
Combination and overtone resonances are observed and their role is elucidated.
In larger molecules, annihilation rates from VFR far exceed those explicable on
the basis of single-mode resonances. These enhancements increase rapidly with
the number of vibrational degrees of freedom. While the details are as yet
unclear, intramolecular vibrational energy redistribution to states that do not
couple directly to the positron continuum appears to be responsible for these
enhanced annihilation rates. Downshifts of the VFR from the vibrational mode
energies have provided binding energies for thirty species. Their dependence
upon molecular parameters and their relationship to positron-atom and
positron-molecule binding energy calculations are discussed. Feshbach
resonances and positron binding to molecules are compared with the analogous
electron-molecule (negative ion) cases. The relationship of VFR-mediated
annihilation to other phenomena such as Doppler-broadening of the gamma-ray
annihilation spectra, annihilation of thermalized positrons in gases, and
annihilation-induced fragmentation of molecules is discussed.Comment: 50 pages, 40 figure
Dynamically controlled deposition of colloidal nanoparticles suspension in evaporating drops using laser radiation
Dynamic control of the distribution of polystyrene suspended nanoparticles in evaporating droplets is investigated using a 2.9 ÎŒm high power laser. Under laser radiation a droplet is locally heated and fluid flows are induced that overcome the capillary flow, and thus a reversal of the coffee-stain effect is observed. Suspension particles are accumulated in a localised area, one order of magnitude smaller than the original droplet size. By scanning the laser beam over the droplet, particles can be deposited in an arbitrary pattern. This finding raises the possibility for direct laser writing of suspended particles through a liquid layer. Furthermore, a highly uniform coating is possible by manipulating the laser beam diameter and exposure time. The effect is expected to be universally applicable to aqueous solutions independent of solutes (either particles or molecules) and deposited substrates
Patterns of subâoptimal change following CBT for childhood anxiety
Background: Children and adolescents demonstrate diverse patterns of symptom change and disorder remission following cognitive behavioural therapy (CBT) for anxiety disorders. To better understand children who respond subâoptimally to CBT, this study investigated youths (N = 1,483) who continued to meet criteria for one or more clinical anxiety diagnosis immediately following treatment or at any point during the 12 months following treatment. Methods: Data were collected from 10 clinical sites with assessments at preâand postâtreatment and at least once more at 3, 6 or 12âmonth followâup. Participants were assigned to one of three groups based on diagnostic status for youths who: (a) retained an anxiety diagnosis from post to end point (minimal responders); (b) remitted anxiety diagnoses at post but relapsed by end point (relapsed responders); and (c) retained a diagnosis at post but remitted to be diagnosis free at end point (delayed responders). Growth curve models assessed patterns of change over time for the three groups and examined predictors associated with these patterns including demographic, clinical and parental factors, as well as treatment factors. Results: Higher primary disorder severity, being older, having a greater number of anxiety disorders, having social anxiety disorder, as well as higher maternal psychopathology differentiated the minimal responders from the delayed and relapsed responders at the baseline. Results from the growth curve models showed that severity of the primary disorder and treatment modality differentiated patterns of linear change only. Higher severity was associated with significantly less improvement over time for the minimal and relapsed response groups, as was receiving group CBT, when compared to the delayed response group. Conclusions: Subâoptimal response patterns can be partially differentiated using variables assessed at preâtreatment. Increased understanding of different patterns of change following treatment may provide direction for clinical decisionâmaking and for tailoring treatments to specific groups of clinically anxious youth. Future research may benefit from assessing progress during treatment to detect emerging response patterns earlier
Neptune to the Common-wealth of England (1652): the republican Britannia and the continuity of interests
In the seventeenth century, John Kerrigan reminds us, âmodels of empire did not always turn on monarchyâ. In this essay, I trace a vision of âNeptuneâs empireâ shared by royalists and republicans, binding English national interest to British overseas expansion. I take as my text a poem entitled âNeptune to the Common-wealth of Englandâ, prefixed to Marchamont Nedhamâs 1652 English translation of Mare Clausum (1635), John Seldenâs response to Mare Liberum (1609) by Hugo Grotius. This minor work is read alongside some equally obscure and more familiar texts in order to point up the ways in which it speaks to persistent cultural and political interests. I trace the afterlife of this verse, its critical reception and its unique status as a fragment that exemplifies the crossover between colonial republic and imperial monarchy at a crucial moment in British history, a moment that, with Brexit, remains resonant
LipIDens : simulation assisted interpretation of lipid densities in cryo-EM structures of membrane proteins
Cryo-electron microscopy (cryo-EM) enables the determination of membrane protein structures in native-like environments. Characterising how membrane proteins interact with the surrounding membrane lipid environment is assisted by resolution of lipid-like densities visible in cryo-EM maps. Nevertheless, establishing the molecular identity of putative lipid and/or detergent densities remains challenging. Here we present LipIDens, a pipeline for molecular dynamics (MD) simulation-assisted interpretation of lipid and lipid-like densities in cryo-EM structures. The pipeline integrates the implementation and analysis of multi-scale MD simulations for identification, ranking and refinement of lipid binding poses which superpose onto cryo-EM map densities. Thus, LipIDens enables direct integration of experimental and computational structural approaches to facilitate the interpretation of lipid-like cryo-EM densities and to reveal the molecular identities of protein-lipid interactions within a bilayer environment. We demonstrate this by application of our open-source LipIDens code to ten diverse membrane protein structures which exhibit lipid-like densities
Ab initio molecular dynamics of liquid water using embedded-fragment second-order many-body perturbation theory towards its accurate property prediction
A direct, simultaneous calculation of properties of a liquid using an ab initio electron-correlated theory has long been unthinkable. Here we present structural, dynamical, and response properties of liquid water calculated by ab initio molecular dynamics using the embedded-fragment spin-component-scaled second-order many-body perturbation method with the aug-cc-pVDZ basis set. This level of theory is chosen as it accurately and inexpensively reproduces the water dimer potential energy surface from the coupled-cluster singles, doubles, and noniterative triples with the augcc-pVQZ basis set, which is nearly exact. The calculated radial distribution function, self-diffusion coefficient, coordinate number, and dipole moment, as well as the infrared and Raman spectra are in excellent agreement with experimental results. The shapes and widths of the OH stretching bands in the infrared and Raman spectra and their isotropic-anisotropic Raman noncoincidence, which reflect the diverse local hydrogen-bond environment, are also reproduced computationally. The simulation also reveals intriguing dynamic features of the environment, which are difficult to probe experimentally, such as a surprisingly large fluctuation in the coordination number and the detailed mechanism by which the hydrogen donating water molecules move across the first and second shells, thereby causing this fluctuationopen
Phase III crystal structure and 115 K phase transition of hexamethylbenzene
High-resolution spectroscopic dataâRaman, infrared, and electronicâhave been employed for the study of low-temperature, phase III, hexamethylbenzene and its associated λ-type phase transition. Phase III is trigonal, with point group S 6 and one molecule per primitive unit cell, giving an S 6 site group, an S 6 molecular group, and a trivial interchange group. The λ-type phase transition is not second order, and it is not related to a free rotation of the methyl groups. Restricted, geared methyl-group rotations do exist both above and below the phase transition temperature, and are sensitive to it. The molecular point symmetry is S 6 in phase III and effectively so in phase II.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/44839/1/10870_2005_Article_BF01239675.pd
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