Intermittent random walks for an optimal search strategy: One-dimensional case

We study the search kinetics of an immobile target by a concentration of randomly moving searchers. The object of the study is to optimize the probability of detection within the constraints of our model. The target is hidden on a one-dimensional lattice in the sense that searchers have no a priori information about where it is, and may detect it only upon encounter. The searchers perform random walks in discrete time n=0,1,2, ..., N, where N is the maximal time the search process is allowed to run. With probability \alpha the searchers step on a nearest-neighbour, and with probability (1-\alpha) they leave the lattice and stay off until they land back on the lattice at a fixed distance L away from the departure point. The random walk is thus intermittent. We calculate the probability P_N that the target remains undetected up to the maximal search time N, and seek to minimize this probability. We find that P_N is a non-monotonic function of \alpha, and show that there is an optimal choice \alpha_{opt}(N) of \alpha well within the intermittent regime, 0 < \alpha_{opt}(N) < 1, whereby P_N can be orders of magnitude smaller compared to the "pure" random walk cases \alpha =0 and \alpha = 1.Comment: 19 pages, 5 figures; submitted to Journal of Physics: Condensed Matter; special issue on Chemical Kinetics Beyond the Textbook: Fluctuations, Many-Particle Effects and Anomalous Dynamics, eds. K.Lindenberg, G.Oshanin and M.Tachiy

Massless particles on supergroups and AdS3 x S3 supergravity

Firstly, we study the state space of a massless particle on a supergroup with a reparameterization invariant action. After gauge fixing the reparameterization invariance, we compute the physical state space through the BRST cohomology and show that the quadratic Casimir Hamiltonian becomes diagonalizable in cohomology. We illustrate the general mechanism in detail in the example of a supergroup target GL(1|1). The space of physical states remains an indecomposable infinite dimensional representation of the space-time supersymmetry algebra. Secondly, we show how the full string BRST cohomology in the particle limit of string theory on AdS3 x S3 renders the quadratic Casimir diagonalizable, and reduces the Hilbert space to finite dimensional representations of the space-time supersymmetry algebra (after analytic continuation). Our analysis provides an efficient way to calculate the Kaluza-Klein spectrum for supergravity on AdS3 x S3. It may also be a step towards the identification of an interesting and simpler subsector of logarithmic supergroup conformal field theories, relevant to string theory.Comment: 16 pages, 10 figure

Survival of an evasive prey

We study the survival of a prey that is hunted by N predators. The predators perform independent random walks on a square lattice with V sites and start a direct chase whenever the prey appears within their sighting range. The prey is caught when a predator jumps to the site occupied by the prey. We analyze the efficacy of a lazy, minimal-effort evasion strategy according to which the prey tries to avoid encounters with the predators by making a hop only when any of the predators appears within its sighting range; otherwise the prey stays still. We show that if the sighting range of such a lazy prey is equal to 1 lattice spacing, at least 3 predators are needed in order to catch the prey on a square lattice. In this situation, we establish a simple asymptotic relation ln(Pev)(t) \sim (N/V)2ln(Pimm(t)) between the survival probabilities of an evasive and an immobile prey. Hence, when the density of the predators is low N/V<<1, the lazy evasion strategy leads to the spectacular increase of the survival probability. We also argue that a short-sighting prey (its sighting range is smaller than the sighting range of the predators) undergoes an effective superdiffusive motion, as a result of its encounters with the predators, whereas a far-sighting prey performs a diffusive-type motion.Comment: 6 pages, 5 figure

Virus-Mediated Cell-Cell Fusion

Cell-cell fusion between eukaryotic cells is a general process involved in many physiological and pathological conditions, including infections by bacteria, parasites, and viruses. As obligate intracellular pathogens, viruses use intracellular machineries and pathways for efficient replication in their host target cells. Interestingly, certain viruses, and, more especially, enveloped viruses belonging to different viral families and including human pathogens, can mediate cell-cell fusion between infected cells and neighboring non-infected cells. Depending of the cellular environment and tissue organization, this virus-mediated cell-cell fusion leads to the merge of membrane and cytoplasm contents and formation of multinucleated cells, also called syncytia, that can express high amount of viral antigens in tissues and organs of infected hosts. This ability of some viruses to trigger cell-cell fusion between infected cells as virus-donor cells and surrounding non-infected target cells is mainly related to virus-encoded fusion proteins, known as viral fusogens displaying high fusogenic properties, and expressed at the cell surface of the virus-donor cells. Virus-induced cell-cell fusion is then mediated by interactions of these viral fusion proteins with surface molecules or receptors involved in virus entry and expressed on neighboring non-infected cells. Thus, the goal of this review is to give an overview of the different animal virus families, with a more special focus on human pathogens, that can trigger cell-cell fusion

Random walks on finite lattice tubes

Exact results are obtained for random walks on finite lattice tubes with a single source and absorbing lattice sites at the ends. Explicit formulae are derived for the absorption probabilities at the ends and for the expectations that a random walk will visit a particular lattice site before being absorbed. Results are obtained for lattice tubes of arbitrary size and each of the regular lattice types; square, triangular and honeycomb. The results include an adjustable parameter to model the effects of strain, such as surface curvature, on the surface diffusion. Results for the triangular lattice tubes and the honeycomb lattice tubes model diffusion of adatoms on single walled zig-zag carbon nano-tubes with open ends.Comment: 22 pages, 4 figure

Asymptotic Symmetries of String Theory on AdS3 X S3 with Ramond-Ramond Fluxes

String theory on AdS3 space-times with boundary conditions that allow for black hole states has global asymptotic symmetries which include an infinite dimensional conformal algebra. Using the conformal current algebra for sigma-models on PSU(1,1|2), we explicitly construct the R-symmetry and Virasoro charges in the worldsheet theory describing string theory on AdS3 X S3 with Ramond-Ramond fluxes. We also indicate how to construct the full boundary superconformal algebra. The boundary superconformal algebra plays an important role in classifying the full spectrum of string theory on AdS3 with Ramond-Ramond fluxes, and in the microscopic entropy counting in D1-D5 systems.Comment: 30 page

Geometry of open strings ending on backreacting D3-branes

We investigate open string theory on backreacting D3-branes using a spacetime approach. We study in detail the half-BPS supergravity solutions describing open strings ending on D3-branes, in the near horizon of the D3-branes. We recover quantitatively several non-trivial features of open string physics including the appearance of D3-brane spikes, the polarization of fundamental strings into D5-branes, and the Hanany-Witten effect. Finally we detail the computation of the gravitational potential between two open strings, and contrast it with the holographic computation of Wilson lines. We argue that the D-brane backreaction has a large influence on the low-energy gravity, which may lead to experimental tests for string theory brane-world scenarios.Comment: 64 pages, 20 figure

Geometry-controlled kinetics

It has long been appreciated that transport properties can control reaction kinetics. This effect can be characterized by the time it takes a diffusing molecule to reach a target -- the first-passage time (FPT). Although essential to quantify the kinetics of reactions on all time scales, determining the FPT distribution was deemed so far intractable. Here, we calculate analytically this FPT distribution and show that transport processes as various as regular diffusion, anomalous diffusion, diffusion in disordered media and in fractals fall into the same universality classes. Beyond this theoretical aspect, this result changes the views on standard reaction kinetics. More precisely, we argue that geometry can become a key parameter so far ignored in this context, and introduce the concept of "geometry-controlled kinetics". These findings could help understand the crucial role of spatial organization of genes in transcription kinetics, and more generally the impact of geometry on diffusion-limited reactions.Comment: Submitted versio

The influence of D-branes' backreaction upon gravitational interactions between open strings

We argue that gravitational interactions between open strings ending on D3-branes are largely shaped by the D3-branes' backreaction. To this end we consider classical open strings coupled to general relativity in Poincare AdS5 backgrounds. We compute the linear gravitational backreaction of a static string extending up to the Poincare horizon, and deduce the potential energy between two such strings. If spacetime is non-compact, we find that the gravitational potential energy between parallel open strings is independent of the strings' inertial masses and goes like 1/r at large distance r. If the space transverse to the D3-branes is suitably compactified, a collective mode of the graviton propagates usual four-dimensional gravity. In that case the backreaction of the D3-branes induces a correction to the Newtonian potential energy that violates the equivalence principle. The observed enhancement of the gravitational attraction is specific to string theory; there is no similar effect for point-particles.Comment: 28 pages, 7 figures. Typos corrected, minor addition