17 research outputs found
Supplemental Data from Epistatic interactions influence terrestrial-marine functional shifts in cetacean rhodopsin
Supplemental Tables 1-
RH2 amino acid aligment
Alignment of RH2 amino acid sequences - corresponds to figure S
Variation in Rh2 non-synonymous rates of evolution (dN ) across species in the main dataset
Gene tree for Rh2 where branch lengths are scaled by dN rate (substitutions per codon) estimated along that branch by a free-ratio model as implemented in PAM
Variation in Rh1 non-synonymous rates of evolution (dN ) across Passerines
Branch lengths are scaled by dN rates. Branch lengths were estimated using a free ratio model as implemented in PAML, that estimates independent dN rates for each branch in the tree
Time calibrated phylogeny of the New World warblers, Old World warblers and Bowerbirds used in this study.
Phylogeny shown in Fig. 1. Branch lengths are proportional to tim
Table S1 from The role of ecological factors in shaping bat cone opsin evolution
Species list, accession number and ecological classificatio
Table S8 from The role of ecological factors in shaping bat cone opsin evolution
Codon-based estimates of divergence between bat Lws and Sws1 sequence
Table S8 from The role of ecological factors in shaping bat cone opsin evolution
Codon-based estimates of divergence between bat Lws and Sws1 sequence