Future directions for river carbon biogeochemistry observations

Rivers carry large quantities of carbon and form an important link between terrestrial, marine and atmospheric biogeochemical cycles, yet our observations of river carbon are severely limited. Here we provide a blueprint to build a global River Observation System that would improve our ability to observe and predict changes in this crucial piece of the global carbon cycle

Effects of Streambed Morphology and Biofilm Growth on the Transient Storage of Solutes

Microbial biofilms are the prime site of nutrient and contaminant removal in streams. It is therefore essential to understand how biofilms affect hydrodynamic exchange, solute transport, and retention in systems where geomorphology and induced hydrodynamics shape their growth and structure. We experimented with large-scale streamside flumes with streambed landscapes constructed from graded bedforms of constant height and wavelength. Each flume had a different bedform height and was covered with a layer of gravel as substratum for benthic microbial biofilms. Biofilms developed different biomass and physical structures in response to the hydrodynamic conditions induced by the streambed morphology. Step injections of conservative tracers were performed at different biofilm growth stages. The experimental breakthrough curves were analyzed with the STIR model, using a residence time approach to characterize the retention effects associated with biofilms. The retained mass of the solute increased with biofilm biomass and the biofilm-associated retention was furthermore related to bedform height. We tentatively relate this behavior to biofilm structural differentiation induced by bed morphology, which highlights the strong linkage between geomorphology, hydrodynamics, and biofilms in natural streams and provide important clues for stream restoration

The role of phages for microdiverse bacterial communities in proglacial stream biofilms

Viruses modulate the diversity and activity of microbial communities. However, little is known about their role for the structure of stream bacterial biofilm communities. Here, we present insights into the diversity and composition of viral communities in various streams draining three proglacial floodplains in Switzerland. Proglacial streams are characterized by extreme environmental conditions, including near-freezing temperatures and ultra-oligotrophy. These conditions select for few but well-adapted bacterial clades, which dominate biofilm communities and occupy niches via microdiversification. We used metagenomic sequencing to reveal a diverse biofilm viral assemblage in these streams. Across the different floodplains and streams, viral community composition was tightly coupled to that of the bacterial hosts, which was underscored by generally high host specificity. Combining predictions of phage-host interactions with auxiliary metabolic genes (AMGs), we identify specific AMGs shared by phages infecting microdiverse clade members. Our work provides a step towards a better understanding of the complex interactions among bacteria and phages in stream biofilm communities in general and streams influenced by glacier meltwaters and characterized by microdiversity in particular

Experimental evidence reveals impact of drought periods on dissolved organic matter quality and ecosystem metabolism in subalpine streams

Subalpine streams are predicted to experience lower summer discharge following climate change and water extractions. In this study, we aimed to understand how drought periods impact dissolved organic matter (DOM) processing and ecosystem metabolism of subalpine streams. We mimicked a gradient of drought conditions in stream‐side flumes and evaluated implications of drought on DOM composition, gross primary production, and ecosystem respiration. Our experiment demonstrated a production and release of DOM from biofilms and leaf litter decomposition at low discharges, increasing dissolved organic carbon concentrations in stream water by up to 50%. Absorbance and fluorescence properties suggested that the released DOM was labile for microbial degradation. Dissolved organic carbon mass balances revealed a high contribution of internal processes to the carbon budget during low flow conditions. The flumes with low discharge were transient sinks of atmospheric CO2 during the first 2 weeks of drought. After this autotrophic phase, the metabolic balance of these flumes turned heterotrophic, suggesting a nutrient limitation for primary production, while respiration remained high. Overall our experimental findings suggest that droughts in subalpine streams will enhance internal carbon cycling by transiently increasing primary production and more permanently respiration as the drought persists. We propose that the duration of a drought period combined with inorganic nutrient availability are key variables that determine if more carbon is respired in situ or exported downstream

Nitrogen processing and the role of epilithic biofilms downstream of a wastewater treatment plant

We investigated how dissolved inorganic N (DIN) inputs from a wastewater treatment plant (WWTP) effluent are processed biogeochemically by the receiving stream. We examined longitudinal patterns of NH4+ and NO3− concentrations and their 15N signatures along a stream reach downstream of a WWTP. We compared the δ15N signatures of epilithic biofilms with those of DIN to assess the role of stream biofilms in N processing. We analyzed the δ15N signatures of biofilms coating light- and dark-side surfaces of cobbles separately to test whether light constrains functioning of biofilm communities. We sampled during 2 contrasting periods of the year (winter and summer) to explore whether changes in environmental conditions affected N biogeochemical processes. The study reach had a remarkable capacity for transformation and removal of DIN, but the magnitude and relevance of different biogeochemical pathways of N processing differed between seasons. In winter, assimilation and nitrification influenced downstream N fluxes. These processes were spatially segregated at the microhabitat scale, as indicated by a significant difference in the δ15N signature of light- and dark-side biofilms, a result suggesting that nitrification was mostly associated with dark-side biofilms. In summer, N processing was intensified, and denitrification became an important N removal pathway. The δ15N signatures of the light- and dark-side biofilms were similar, a result suggesting less spatial segregation of N cycling processes at this microhabitat scale. Collectively, our results highlight the capacity of WWTP-influenced streams to transform and remove WWTP-derived N inputs and indicate the active role of biofilms in these in-stream processes

Biophysical controls on cluster dynamics and architectural differentiation of microbial biofilms in contrasting flow environments

Ecology, with a traditional focus on plants and animals, seeks to understand the mechanisms underlying structure and dynamics of communities. In microbial ecology, the focus is changing from planktonic communities to attached biofilms that dominate microbial life in numerous systems. Therefore, interest in the structure and function of biofilms is on the rise. Biofilms can form reproducible physical structures (i.e. architecture) at the millimetre-scale, which are central to their functioning. However, the spatial dynamics of the clusters conferring physical structure to biofilms remains often elusive. By experimenting with complex microbial communities forming biofilms in contrasting hydrodynamic microenvironments in stream mesocosms, we show that morphogenesis results in 'ripple-like' and 'star-like' architectures - as they have also been reported from monospecies bacterial biofilms, for instance. To explore the potential contribution of demographic processes to these architectures, we propose a size-structured population model to simulate the dynamics of biofilm growth and cluster size distribution. Our findings establish that basic physical and demographic processes are key forces that shape apparently universal biofilm architectures as they occur in diverse microbial but also in single-species bacterial biofilm

Spatial patterns of benthic biofilm diversity among streams draining proglacial floodplains

Glacier shrinkage opens new proglacial terrain with pronounced environmental gradients along longitudinal and lateral chronosequences. Despite the environmental harshness of the streams that drain glacier forelands, their benthic biofilms can harbor astonishing biodiversity spanning all domains of life. Here, we studied the spatial dynamics of prokaryotic and eukaryotic photoautotroph diversity within braided glacier-fed streams and tributaries draining lateral terraces predominantly fed by groundwater and snowmelt across three proglacial floodplains in the Swiss Alps. Along the lateral chronosequence, we found that benthic biofilms in tributaries develop higher biomass than those in glacier-fed streams, and that their respective diversity and community composition differed markedly. We also found spatial turnover of bacterial communities in the glacier-fed streams along the longitudinal chronosequence. These patterns along the two chronosequences seem unexpected given the close spatial proximity and connectivity of the various streams, suggesting environmental filtering as an underlying mechanism. Furthermore, our results suggest that photoautotrophic communities shape bacterial communities across the various streams, which is understandable given that algae are the major source of organic matter in proglacial streams. Overall, our findings shed new light on benthic biofilms in proglacial streams now changing at rapid pace owing to climate-induced glacier shrinkage

Thinking like a consumer: Linking aquatic basal metabolism and consumer dynamics

The increasing availability of high-frequency freshwater ecosystem metabolism data provides an opportunity to identify links between metabolic regimes, as gross primary production and ecosystem respiration patterns, and consumer energetics with the potential to improve our current understanding of consumer dynamics (e.g., population dynamics, community structure, trophic interactions). We describe a conceptual framework linking metabolic regimes of flowing waters with consumer community dynamics. We use this framework to identify three emerging research needs: (1) quantifying the linkage of metabolism and consumer production data via food web theory and carbon use efficiencies, (2) evaluating the roles of metabolic dynamics and other environmental regimes (e.g., hydrology, light) in consumer dynamics, and (3) determining the degree to which metabolic regimes influence the evolution of consumer traits and phenology. Addressing these needs will improve the understanding of consumer biomass and production patterns as metabolic regimes can be viewed as an emergent property of food webs