3,686 research outputs found
The Offline Software Framework of the Pierre Auger Observatory
The Pierre Auger Observatory is designed to unveil the nature and the origins
of the highest energy cosmic rays. The large and geographically dispersed
collaboration of physicists and the wide-ranging collection of simulation and
reconstruction tasks pose some special challenges for the offline analysis
software. We have designed and implemented a general purpose framework which
allows collaborators to contribute algorithms and sequencing instructions to
build up the variety of applications they require. The framework includes
machinery to manage these user codes, to organize the abundance of
user-contributed configuration files, to facilitate multi-format file handling,
and to provide access to event and time-dependent detector information which
can reside in various data sources. A number of utilities are also provided,
including a novel geometry package which allows manipulation of abstract
geometrical objects independent of coordinate system choice. The framework is
implemented in C++, and takes advantage of object oriented design and common
open source tools, while keeping the user side simple enough for C++ novices to
learn in a reasonable time. The distribution system incorporates unit and
acceptance testing in order to support rapid development of both the core
framework and contributed user code.Comment: 4 pages, 2 figures, presented at IEEE NSS/MIC, 23-29 October 2005,
Puerto Ric
The Multifunctional Sorting Protein PACS-2 Regulates SIRT1-Mediated Deacetylation of p53 to Modulate p21-Dependent Cell-Cycle Arrest
SIRT1 regulates the DNA damage response by deacetylating p53, thereby repressing p53 transcriptional output. Here, we demonstrate that the sortingprotein PACS-2 regulates SIRT1-mediated deacetylation of p53 to modulate the DNA damage response. PACS-2 knockdown cells failed to efficiently undergo p53-induced cell-cycle arrest in response to DNA damage. Accordingly, p53 acetylation was reduced both in PACS-2 knockdown cells and thymocytes from Pacs-2-/- mice, thereby blunting induction of the cyclin-dependent kinase inhibitor p21 (CDKN1A). The SIRT1 inhibitor EX-527 or SIRT1 knockdown restored p53 acetylation and p21 induction as well as p21-dependent cell-cycle arrest in PACS-2 knockdown cells. Traffickingstudies revealed that cytoplasmic PACS-2 shuttled to the nucleus, where it interacted with SIRT1 andrepressed SIRT1-mediated p53 deacetylation. Correspondingly, invitro assays demonstrated that PACS-2 directly inhibited SIRT1-catalyzed p53 deacetylation. Together, these findings identify PACS-2 as an invivo mediator of the SIRT1-p53-p21 axis that modulates the DNA damage response
Resolving galaxies in time and space: II: Uncertainties in the spectral synthesis of datacubes
In a companion paper we have presented many products derived from the
application of the spectral synthesis code STARLIGHT to datacubes from the
CALIFA survey, including 2D maps of stellar population properties and 1D
averages in the temporal and spatial dimensions. Here we evaluate the
uncertainties in these products. Uncertainties due to noise and spectral shape
calibration errors and to the synthesis method are investigated by means of a
suite of simulations based on 1638 CALIFA spectra for NGC 2916, with
perturbations amplitudes gauged in terms of the expected errors. A separate
study was conducted to assess uncertainties related to the choice of
evolutionary synthesis models. We compare results obtained with the Bruzual &
Charlot models, a preliminary update of them, and a combination of spectra
derived from the Granada and MILES models. About 100k CALIFA spectra are used
in this comparison.
Noise and shape-related errors at the level expected for CALIFA propagate to
0.10-0.15 dex uncertainties in stellar masses, mean ages and metallicities.
Uncertainties in A_V increase from 0.06 mag in the case of random noise to 0.16
mag for shape errors. Higher order products such as SFHs are more uncertain,
but still relatively stable. Due to the large number statistics of datacubes,
spatial averaging reduces uncertainties while preserving information on the
history and structure of stellar populations. Radial profiles of global
properties, as well as SFHs averaged over different regions are much more
stable than for individual spaxels. Uncertainties related to the choice of base
models are larger than those associated with data and method. Differences in
mean age, mass and metallicity are ~ 0.15 to 0.25 dex, and 0.1 mag in A_V.
Spectral residuals are ~ 1% on average, but with systematic features of up to
4%. The origin of these features is discussed. (Abridged)Comment: A&A, accepte
Observational constraints to boxy/peanut bulge formation time
Boxy/peanut bulges are considered to be part of the same stellar structure as
bars and both could be linked through the buckling instability. The Milky Way
is our closest example. The goal of this letter is determining if the mass
assembly of the different components leaves an imprint in their stellar
populations allowing to estimate the time of bar formation and its evolution.
To this aim we use integral field spectroscopy to derive the stellar age
distributions, SADs, along the bar and disc of NGC 6032. The analysis shows
clearly different SADs for the different bar areas. There is an underlying old
(>=12 Gyr) stellar population for the whole galaxy. The bulge shows star
formation happening at all times. The inner bar structure shows stars of ages
older than 6 Gyrs with a deficit of younger populations. The outer bar region
presents a SAD similar to that of the disc. To interpret our results, we use a
generic numerical simulation of a barred galaxy. Thus, we constrain, for the
first time, the epoch of bar formation, the buckling instability period and the
posterior growth from disc material. We establish that the bar of NGC 6032 is
old, formed around 10 Gyr ago while the buckling phase possibly happened around
8 Gyr ago. All these results point towards bars being long-lasting even in the
presence of gas.Comment: Accepted for publication in MNRAS Letter
The Offline Software Framework of the Pierre Auger Observatory
To be published in the ProceedingsInternational audienceThe Pierre Auger Observatory is designed to unveil the nature and the origins of the highest energy cosmic rays. The large and geographically dispersed collaboration of physicists and the wide-ranging collection of simulation and reconstruction tasks pose some special challenges for the offline analysis software. We have designed and implemented a general purpose framework which allows collaborators to contribute algorithms and sequencing instructions to build up the variety of applications they require. The framework includes machinery to manage these user codes, to organize the abundance of user-contributed configuration files, to facilitate multi-format file handling, and to provide access to event and time-dependent detector information which can reside in various data sources. A number of utilities are also provided, including a novel geometry package which allows manipulation of abstract geometrical objects independent of coordinate system choice. The framework is implemented in C++, and takes advantage of object oriented design and common open source tools, while keeping the user side simple enough for C++ novices to learn in a reasonable time. The distribution system incorporates unit and acceptance testing in order to support rapid development of both the core framework and contributed user code
Ionized gas kinematics of galaxies in the CALIFA survey I: Velocity fields, kinematic parameters of the dominant component, and presence of kinematically distinct gaseous systems
This work provides an overall characterization of the kinematic behavior of
the ionized gas of the galaxies included in the Calar Alto Legacy Integral
field Area (CALIFA), offering kinematic clues to potential users of this survey
for including kinematical criteria for specific studies. From the first 200
galaxies observed by CALIFA, we present the 2D kinematic view of the 177
galaxies satisfying a gas detection threshold. After removing the stellar
contribution, we used the cross-correlation technique to obtain the radial
velocity of the dominant gaseous component. The main kinematic parameters were
directly derived from the radial velocities with no assumptions on the internal
motions. Evidence of the presence of several gaseous components with different
kinematics were detected by using [OIII] profiles. Most objects in the sample
show regular velocity fields, although the ionized-gas kinematics are rarely
consistent with simple coplanar circular motions. 35% of the objects present
evidence of a displacement between the photometric and kinematic centers larger
than the original spaxel radii. Only 17% of the objects in the sample exhibit
kinematic lopsidedness when comparing receding and approaching sides of the
velocity fields, but most of them are interacting galaxies exhibiting nuclear
activity. Early-type galaxies in the sample present clear photometric-kinematic
misaligments. There is evidence of asymmetries in the emission line profiles
suggesting the presence of kinematically distinct gaseous components at
different distances from the nucleus. This work constitutes the first
determination of the ionized gas kinematics of the galaxies observed in the
CALIFA survey. The derived velocity fields, the reported kinematic
peculiarities and the identification of the presence of several gaseous
components might be used as additional criteria for selecting galaxies for
specific studies.Comment: 38 pages, 16 figures, 4 tables. Paper accepted for publication in A&
Discovering a Light Higgs Boson with Light
We evaluate the prospects for detecting a non-standard light Higgs boson with
a significant branching ratio to two photons, in Run II of the Fermilab
Tevatron. We derive the reach for several channels: inclusive,
jet and jets. We present the expected Run II limits on
the branching ratio of as a function of the Higgs mass, for
the case of ``bosonic'', as well as ``topcolor'' Higgs bosons.Comment: 11 pages, LaTeX, 7 figures, 4 tables, uses aipproc2.sty, contributed
to the Physics at Run II Workshop, analysis redone with optimized cuts and
improved background estimate, references adde
The Pierre Auger Observatory offline software
The Pierre Auger Observatory aims to discover the nature and origins of the highest energy cosmic rays. The large number of physicists involved in the project and the diversity of simulation and reconstruction tasks pose a challenge for the offline analysis software, not unlike the challenges confronting software for very large high energy physics experiments. Previously we have reported on the design and implementation of a general purpose but relatively lightweight framework which allows collaborators to contribute algorithms and sequencing instructions to build up the variety of applications they require. In this report, we update the status of this work and describe some of the successes and difficulties encountered over the last few years of use. We explain the machinery used to manage user contributions, to organize the abundance of configuration files, to facilitate multi-format file handling, and to provide access to event and time-dependent detector information residing in various data sources. We also describe the testing procedures used to help maintain stability of the code in the face of a large number of contributions. Foundation classes will also be discussed, including a novel geometry package which allows manipulation of abstract geometrical objects independent of coordinate system choice
Resolving galaxies in time and space: I: Applying STARLIGHT to CALIFA data cubes
Fossil record methods based on spectral synthesis techniques have matured
over the past decade, and their application to integrated galaxy spectra
fostered substantial advances on the understanding of galaxies and their
evolution. Yet, because of the lack of spatial resolution, these studies are
limited to a global view, providing no information about the internal physics
of galaxies. Motivated by the CALIFA survey, which is gathering Integral Field
Spectroscopy over the full optical extent of 600 galaxies, we have developed an
end-to-end pipeline which: (i) partitions the observed data cube into Voronoi
zones in order to, when necessary and taking due account of correlated errors,
increase the S/N, (ii) extracts spectra, including propagated errors and
bad-pixel flags, (iii) feeds the spectra into the STARLIGHT spectral synthesis
code, (iv) packs the results for all galaxy zones into a single file, (v)
performs a series of post-processing operations, including zone-to-pixel image
reconstruction and unpacking the spectral and stellar population properties
into multi-dimensional time, metallicity, and spatial coordinates. This paper
provides an illustrated description of this whole pipeline and its products.
Using data for the nearby spiral NGC 2916 as a show case, we go through each of
the steps involved, presenting ways of visualizing and analyzing this manifold.
These include 2D maps of properties such as the v-field, stellar extinction,
mean ages and metallicities, mass surface densities, star formation rates on
different time scales and normalized in different ways, 1D averages in the
temporal and spatial dimensions, projections of the stellar light and mass
growth (x,y,t) cubes onto radius-age diagrams, etc. The results illustrate the
richness of the combination of IFS data with spectral synthesis, providing a
glimpse of what is to come from CALIFA and future surveys. (Abridged)Comment: A&A, accepte
Stellar Population gradients in galaxy discs from the CALIFA survey
While studies of gas-phase metallicity gradients in disc galaxies are common,
very little has been done in the acquisition of stellar abundance gradients in
the same regions. We present here a comparative study of the stellar
metallicity and age distributions in a sample of 62 nearly face-on, spiral
galaxies with and without bars, using data from the CALIFA survey. We measure
the slopes of the gradients and study their relation with other properties of
the galaxies. We find that the mean stellar age and metallicity gradients in
the disc are shallow and negative. Furthermore, when normalized to the
effective radius of the disc, the slope of the stellar population gradients
does not correlate with the mass or with the morphological type of the
galaxies. Contrary to this, the values of both age and metallicity at 2.5
scale-lengths correlate with the central velocity dispersion in a similar
manner to the central values of the bulges, although bulges show, on average,
older ages and higher metallicities than the discs. One of the goals of the
present paper is to test the theoretical prediction that non-linear coupling
between the bar and the spiral arms is an efficient mechanism for producing
radial migrations across significant distances within discs. The process of
radial migration should flatten the stellar metallicity gradient with time and,
therefore, we would expect flatter stellar metallicity gradients in barred
galaxies. However, we do not find any difference in the metallicity or age
gradients in galaxies with without bars. We discuss possible scenarios that can
lead to this absence of difference.Comment: 24 pages, 17 figures, accepted for publication in A&
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