14 research outputs found
Comparative CHARMM and AMOEBA Simulations of Lanthanide Hydration Energetics and Experimental Aqueous-Solution Structures
The accurate understanding
of metal ion hydration in solutions
is a prerequisite for predicting stability, reactivity, and solubility.
Herein, additive CHARMM force field parameters were developed to enable
molecular dynamics simulations of lanthanide (Ln) speciation in water.
Quantitatively similar to the much more resource-intensive polarizable
AMOEBA potential, the CHARMM simulations reproduce the experimental
hydration free energies and correlations in the first shell (Ln-oxygen
distance and hydration number). Comparisons of difference pair-distribution
functions obtained from the two simulation approaches with those from
high-energy X-ray scattering experiments reveal good agreement of
first-coordination sphere correlations for the Lu<sup>3+</sup> ion
(CHARMM only), but further improvement to both approaches is required
to reproduce the broad, non-Gaussian distribution seen from the La<sup>3+</sup> experiment. Second-coordination sphere comparisons demonstrate
the importance of explicitly including an anion in the simulation.
This work describes the usefulness of less resource-intensive additive
potentials in some complex chemical systems such as solution environments
where multiple interactions have similar energetics. In addition,
3-dimensional descriptions of the La<sup>3+</sup> and Lu<sup>3+</sup> coordination geometries are extracted from the CHARMM simulations
and generally discussed in terms of potential improvements to solute-structure
modeling within solution environments
Driving Force for Water Permeation Across Lipid Membranes
The permeation of water across lipid
membranes is of paramount
importance in biological and technological processes. The driving
force for such energetically unfavorable processes is explored here.
To determine the effect of the lipid membrane conformation, water
transport in both liquid-crystalline and ordered gel phases is studied
in zwitterionic dipalmitoyl phosphatidylcholine (DPPC) bilayers and
anionic 1,2-dilauroyl-<i>sn</i>-glycero-3-phosphol-l-serine (DLPS) bilayers via atomistic molecular dynamics simulations.
These phases are accessed by changing the temperature in DPPC membranes
and by additionally changing the valency of counterions (i.e., Na<sup>+</sup> and Zn<sup>2+</sup>) in DLPS membranes. The membrane conformation
is found to play a critical function in water permeation, regardless
of the type of lipid. The fluctuations in the potential energy are
found to have a significant, if not the exclusive, role in the transportation
of water across lipid membranes
Comparative CHARMM and AMOEBA Simulations of Lanthanide Hydration Energetics and Experimental Aqueous-Solution Structures
The accurate understanding
of metal ion hydration in solutions
is a prerequisite for predicting stability, reactivity, and solubility.
Herein, additive CHARMM force field parameters were developed to enable
molecular dynamics simulations of lanthanide (Ln) speciation in water.
Quantitatively similar to the much more resource-intensive polarizable
AMOEBA potential, the CHARMM simulations reproduce the experimental
hydration free energies and correlations in the first shell (Ln-oxygen
distance and hydration number). Comparisons of difference pair-distribution
functions obtained from the two simulation approaches with those from
high-energy X-ray scattering experiments reveal good agreement of
first-coordination sphere correlations for the Lu<sup>3+</sup> ion
(CHARMM only), but further improvement to both approaches is required
to reproduce the broad, non-Gaussian distribution seen from the La<sup>3+</sup> experiment. Second-coordination sphere comparisons demonstrate
the importance of explicitly including an anion in the simulation.
This work describes the usefulness of less resource-intensive additive
potentials in some complex chemical systems such as solution environments
where multiple interactions have similar energetics. In addition,
3-dimensional descriptions of the La<sup>3+</sup> and Lu<sup>3+</sup> coordination geometries are extracted from the CHARMM simulations
and generally discussed in terms of potential improvements to solute-structure
modeling within solution environments
Non-governmental organizations structures
Anion
exchange at positively charged interfaces plays an important
role in a variety of physical and chemical processes. However, the
molecular-scale details of these processes, especially with heavy
and large anionic complexes, are not well-understood. We studied the
adsorption of PtCl<sub>6</sub><sup>2–</sup> anionic complexes
to floating DPTAP monolayers in the presence of excess Cl<sup>–</sup> as a function of the bulk chlorometalate concentration. This system
aims to simulate the industrial conditions for heavy metal separations
with solvent extraction. In situ X-ray scattering and fluorescence
measurements, which are element and depth sensitive, show that the
chlorometalate ions only adsorb in the diffuse layer at lower concentrations,
while they adsorb predominantly in the Stern layer at higher concentrations.
The response of DPTAP molecules to the adsorbed ions is determined
independently by grazing incidence X-ray diffraction and supports
this picture. Molecular dynamics simulations further elucidate the
nanoscale structure of the interfacial complexes. The results suggest
that ion hydration and ion–ion correlations play a key role
in the competitive adsorption process
Ion Transport Mechanisms in Liquid–Liquid Interface
Interfacial
liquid–liquid ion transport is of crucial importance
to biotechnology and industrial separation processes including nuclear
elements and rare earths. A water-in-oil microemulsion is formulated
here with density and dimensions amenable to atomistic molecular dynamics
simulation, facilitating convergent theoretical and experimental approaches
to elucidate interfacial ion transport mechanisms. LutetiumÂ(III) cations
are transported from the 5 nm diameter water pools into the surrounding
oil using an extractant (a lipophilic ligand). Changes in ion coordination
sphere and interactions between the interfacial components are studied
using a combination of synchrotron X-ray scattering, spectroscopy,
and atomistic molecular dynamics simulations. Contrary to existing
hypotheses, our model system shows no evidence of interfacial extractant
monolayers, but rather ions are exchanged through water channels that
penetrate the surfactant monolayer and connect to the oil-based extractant.
Our results highlight the dynamic nature of the oil–water interface
and show that lipophilic ion shuttles need not form flat monolayer
structures to facilitate ion transport across the liquid–liquid
interface
Molecular Origins of Mesoscale Ordering in a Metalloamphiphile Phase
Controlling the assembly of soft
and deformable molecular aggregates
into mesoscale structures is essential for understanding and developing
a broad range of processes including rare earth extraction and cleaning
of water, as well as for developing materials with unique properties.
By combined synchrotron small- and wide-angle X-ray scattering with
large-scale atomistic molecular dynamics simulations we analyze here
a metalloamphiphile–oil solution that organizes on multiple
length scales. The molecules associate into aggregates, and aggregates
flocculate into meso-ordered phases. Our study demonstrates that dipolar
interactions, centered on the amphiphile headgroup, bridge ionic aggregate
cores and drive aggregate flocculation. By identifying specific intermolecular
interactions that drive mesoscale ordering in solution, we bridge
two different length scales that are classically addressed separately.
Our results highlight the importance of individual intermolecular
interactions in driving mesoscale ordering
How Hydrogen Bonds Affect the Growth of Reverse Micelles around Coordinating Metal Ions
Extensive research on hydrogen bonds (H-bonds) have illustrated their critical role in various biological, chemical and physical processes. Given that existing studies are predominantly performed in aqueous conditions, how H-bonds affect both the structure and function of aggregates in organic phase is poorly understood. Herein, we investigate the role of H-bonds on the hierarchical structure of an aggregating amphiphile-oil solution containing a coordinating metal complex by means of atomistic molecular dynamics simulations and X-ray techniques. For the first time, we show that H-bonds not only stabilize the metal complex in the hydrophobic environment by coordinating between the EuÂ(NO<sub>3</sub>)<sub>3</sub> outer-sphere and aggregating amphiphiles, but also affect the growth of such reverse micellar aggregates. The formation of swollen, elongated reverse micelles elevates the extraction of metal ions with increased H-bonds under acidic condition. These new insights into H-bonds are of broad interest to nanosynthesis and biological applications, in addition to metal ion separations
How Hydrogen Bonds Affect the Growth of Reverse Micelles around Coordinating Metal Ions
Extensive research on hydrogen bonds (H-bonds) have illustrated their critical role in various biological, chemical and physical processes. Given that existing studies are predominantly performed in aqueous conditions, how H-bonds affect both the structure and function of aggregates in organic phase is poorly understood. Herein, we investigate the role of H-bonds on the hierarchical structure of an aggregating amphiphile-oil solution containing a coordinating metal complex by means of atomistic molecular dynamics simulations and X-ray techniques. For the first time, we show that H-bonds not only stabilize the metal complex in the hydrophobic environment by coordinating between the EuÂ(NO<sub>3</sub>)<sub>3</sub> outer-sphere and aggregating amphiphiles, but also affect the growth of such reverse micellar aggregates. The formation of swollen, elongated reverse micelles elevates the extraction of metal ions with increased H-bonds under acidic condition. These new insights into H-bonds are of broad interest to nanosynthesis and biological applications, in addition to metal ion separations
Aggregation of Heteropolyanions in Aqueous Solutions Exhibiting Short-Range Attractions and Long-Range Repulsions
Charged colloids and proteins in
aqueous solutions interact via
short-range attractions and long-range repulsions (SALR) and exhibit
complex structural phases. These include homogeneously dispersed monomers,
percolated monomers, clusters, and percolated clusters. We report
the structural architectures of simple charged systems in the form
of spherical, Keggin-type heteropolyanions (HPAs) by small-angle X-ray
scattering (SAXS) and molecular dynamics (MD) simulations. Structure
factors obtained from the SAXS measurements show that the HPAs interact
via SALR. Concentration and temperature dependences of the structure
factors for HPAs with −3<i>e</i> (<i>e</i> is the charge of an electron) charge are consistent with a mixture
of nonassociated monomers and associated randomly percolated monomers,
whereas those for HPAs with −4<i>e</i> and −5<i>e</i> charges exhibit only nonassociated monomers in aqueous
solutions. Our experiments show that the increase in magnitude of
the charge of the HPAs increases their repulsive interactions and
inhibits their aggregation in aqueous solutions. MD simulations were
done to reveal the atomistic scale origins of SALR between HPAs. The
short-range attractions result from water or proton-mediated hydrogen
bonds between neighboring HPAs, whereas the long-range repulsions
are due to the distributions of ions surrounding the HPAs