Genetic analysis of some physical properties of bread wheat grain (Triticum aestivum L. em Thell) [Ekmeklik bugdayda (Triticum aestivum L. em Thell) danenin bazi fiziksel ozelliklerinin genetik analizi]

Very little information exists on the relative genetic architecture of the grain physical properties of wheat. The physical properties of grain have a direct or indirect influence on the milling and baking quality of wheat. Therefore, understanding the inheritance of grain physical properties will be useful to improve varieties with better quality. Five bread wheat cultivars were crossed in order to evaluate the mode of inheritance and combining ability and the correlation of the grain's physical properties. Analysis of variance for combining ability showed that both additive and non-additive gene actions were involved in controlling most of the traits. Magnitudes of general combining ability (GCA) for all features except grain weight (GW) and grain height (GH) were higher than those of specific combining ability (SCA) The effect of general combining ability was more prominent for 8 out of 10 traits in accordance with ratio of GCA:SCA. Path coefficient analysis showed that grain width (GWI), number of grains per spike (GS), and grain height (GH) had the highest significant direct and indirect effect on most of the other features. The results obtained from this study might be helpful for wheat breeders trying to develop new varieties with better grain features to improve the milling and baking quality of wheat. © TUBITAK

Phenotypic and genotypic intra-diversity among Anatolian durum wheat "Kunduru" landraces

Kunduru is an important Anatolian landrace having peculiar traits that are appreciated by farmers and breeders. 33 accessions known as Kunduru collected by ICARDA from six geographical provinces of Turkey, were used to study the phenotypic and genotypic intra-diversity. Kunduru landraces exhibited high intra-diversity for most of the studied morphological traits. GPC (12.10-14.90%), vitreousness (75-100%), TKW (31.80-56.70 g), YP (4.70-8.00 ppm), b*-value (14.30-19.50), ash content (1.60-2.0%) and gluten strength (14-60 ml) showed marked variations. Gliadin and glutenin banding patterns showed high polymorphism. 65 alleles were detected with 14 SSR markers, giving a mean of 6.77 alleles per locus. The average PIC value was 0.44 and ranged from 0.11 to 0.70. The average genetic distance between pairs of landraces was 0.47 and ranged between 0.11 and 0.72. This study showed that Kunduru landraces maintains high allelic variation. PCoA indicated that eco-geographical variables have a significant effect on SSR diversity as well as morphological traits. Many of the landraces studied are in danger of disappearing from the local farmers' fields; this study demonstrates the importance of maintaining and conserving this precious genetic resources. © 2016 Elsevier Ltd

Assaying of diversity among soybean (Glycin max (L.) Merr.) and peanut (Arachis hypogaea L.) genotypes at DNA level [Soya fasulyesi (Glycin max (L.) Merr.) ve yerfıstıgı (Arachis hypogaea L.) genotipleri arasındaki çeşitliligin DNA düzeyinde saptanması]

Developing successful strategies to ensure future increase in yield of soybean and peanut crops hinges in part, on improving the genetic basis of the cultivars. Knowledge of genetic relationships in crop breeding programs provides valuable information that can be used by plant breeders as a parental line selection tool. So far, a thorough analysis of genetic diversity among the soybean and peanut genotypes grown in Turkey had not been attempted at DNA level. In this study, inter-simple sequence repeats (ISSR) and sequence-related amplified polymorphism (SRAP) markers were used to evaluate the genetic diversity between 21 soybean and 32 peanut cultivars and breeding lines adapted to different regions of Turkey. The ISSR analysis, which was performed with 46 primers in soybean and 47 primers in peanut, yielded 31 and 26 polymorphic bands, respectively, while 26 and 17 polymorphic amplicons were amplified by 34 and 36 SRAP primer combinations in soybean and peanut, respectively. The unweighted pair group method with arithmetic means dendrograms (UPGMA), based on Jaccard similarities, were obtained from the combined ISSR + SRAP data for both soybean and peanut. In soybean, UPGMA dendrogram clustered all soybean cultivars into the same group except 'Yeşilsoy', whereas, in peanut, it separated cultivars southwest runner and spantex from all the other cultivars, breeding lines, and plant introductions. In light of the narrow germplasm base of soybean and peanut genotypes grown in Turkey, a renewed emphasis should be placed on the introduction of new sources of germplasm into the breeding pool in order to enhance genetic variability to permit continued progress in developing high yielding cultivars and lead to greater gains for selections. The results obtained from this study will be helpful for soybean and peanut breeders in Turkey to gain information about genetic diversity and will enable them to make a future strategy for broadening the genetic basis of these crops. © TÜBİTAK

Variation for selected morphological and quality-related traits among 178 faba bean landraces collected from Turkey

Faba bean is cultivated worldwide and widely used in Mediterranean countries, Asia and Europe. However, only a few faba bean breeders are active in cultivar development. As a result, a limited number of varieties are available for growers. Plant genetic resources or germplasm are fundamental sources for plant breeding, and the assessment of the genetic diversity among germplasm accessions is useful to facilitate more efficient use of plant genetic resources. A mini-core collection of faba bean germplasm (178 landraces and four cultivars), from diverse geographic regions of Turkey, was assessed for agro-morphological performance and some quality traits. There were substantial variations for the investigated morphological and quality characteristics. The analysis of variance revealed that the differences among 182 accessions were significant for all the studied characters. Some accessions showed very good agronomic performance for some traits. Positive and negative correlations existed among different morphological and agronomic traits. Landraces have been classified into four different groups using a cluster analysis. These results suggest that an a priori classification of accessions according to the growing area does not strictly correspond to phenotypic grouping. From the spatial distribution of landraces, however, it has been possible to identify 'superior' accessions of some traits. These findings indicate a number of useful traits in the gene pools and a wide range of phenotypic variation that provides a good source of diversity for use in modern faba bean breeding programmes. © 2013 NIAB

Testing of rye-specific markers located on 1RS chromosome and distribution of 1AL.RS and 1BL.RS translocations in Turkish wheat (Triticum aestivum L., T. durum Desf.) varieties and landraces

Rye (Secale cereale L.) is a valuable source for alien chromosome translocations in wheat breeding, due to its capability to grow and sustain under harsh environmental conditions. Wheat germplasm with 1AL. 1RS and 1BL. 1RS wheat-rye chromosome translocations have been used worldwide by breeders. Determining 1AL. 1RS and 1BL. 1RS translocations in wheat is therefore of important practical value for wheat improvement. In this study, nine rye-specific markers detecting the rye chromosome 1RS in wheat background were evaluated. The markers PAWS5/S6, SCM9 and O-SEC5'-A/O-SEC3'-R amplified specific bands associated with 1AL. 1RS and 1BL. 1RS translocations. These three markers therefore provide a quick and reliable tool to identify and to discriminate these two wheat-rye translocations in wheat background. Six out of nine rye specific markers were subsequently used to determine the frequency of these translocations in commonly grown bread and durum wheat cultivars from Turkey. One hundred seven wheat cultivars and landraces were molecularly screened. Among them, only 4% ('Seri-82', 'Yi{dotless}ldi{dotless}z-98', 'Tahirova', and 'Osmaniyem') harbor the 1BL. 1RS translocation whereas the 1AL. 1RS translocation was not found. The information provided here will contribute to the creation of new Turkish wheat populations with a larger genetic diversity necessary for future requirements. © Springer Science+Business Media B.V. 2009

Genetic analysis of preharvest sprouting tolerance in bread wheat (Triticum aestivum L. emend.Thell.) [Ekmeklik bugdayda (Triticum aestivum L. emend. Thell.) başakta çimlenmeye toleransın genetik analizi]

Rains during grain ripening in wheat (Triticum aestivum L.) can cause preharvest sprouting (PHS), which drastically affects the grain yield and the baking quality of flour. In the present study, to screen 7 cultivars and 4 lines of spring bread wheat for PHS, germination tests were conducted with seeds obtained from wet spikes harvested immediately after natural rainfall. Germination tests were carried out as 3 different treatments: 1) seeds immediately germinated after hand-threshing on sampling day (T1), 2) seeds germinated 1 week later after hand-threshing (T2), and 3) 10 intact spikes kept on paper under laboratory conditions at room temperature, hand threshed and then put to germinate 7 days later (T3). Red-grained cultivars Sagitario and Pandas, red-grained line F6 0314.76/Mrl, and whitegrained cultivar Sunlin showed the higher PHS tolerance, while other wheat cultivars and lines were found to be susceptible to PHS under all treatment conditions. To evaluate the mode of inheritance and combining ability of PHS tolerance, a diallel cross was made between 3 white-grained (susceptible) and 2 red-grained wheat (resistant) cultivars. Analysis of variance for combining ability showed the predominance of an additive gene effect for PHS tolerance, as the variance of the general combining ability was higher than the speci[c combining ability for both percent germination and germination index. Pandas and Sagitario showed positive contributions toward increasing PHS tolerance in the F1 progenies. Results presented in this study will provide useful information for wheat breeders about PHS tolerance or dormancy level in commonly grown wheat cultivars in the Mediterranean region of Turkey, and help them in the development of white wheat cultivars with an inherently higher sprouting tolerance. © Tübi·tak

Development, characterization and mapping of microsatellite markers for lentil (Lens culinaris Medik.)

Lentil is the sixth most important pulse crop terms of production in the world, but the number of available and mapped SSR markers are limited. To develop SSR markers in lentil, four genomic libraries for (CA)n, (GA)n, (AAC)n and (ATG)n repeats were constructed. A total of 360 SSR primers were designed and validated using 15 Turkish lentil cultivars and genotypes. The most polymorphic repeat motifs were GA and CT, with a mean number of alleles per locus of 7.80 and 6.55, respectively. Seventy-eight SSR primers amplified a total of 400 polymorphic alleles, whereas 71 SSR primers produced markers within the expected size range. For 78 polymorphic SSR primers, the average number of alleles per locus was 5.1 and PIC value ranged from 0.07 to 0.89, with an average of 0.58. A linkage map was constructed using 92 individual F2 plants derived from a cross between Karacadağ × Silvan, with 47 SSR markers. The SSR markers developed in this study could be used for germplasm classification and identification and mapping of QTL in lentil. © 2015 Blackwell Verlag GmbH

Diversity Assessment of Turkish Maize Landraces Based on Fluorescent Labelled SSR Markers

Landraces of maize represent a valuable genetic resource for breeding and genetic studies. Since 1970, landraces have been collected from all over Turkey, but the genetic diversity represented in this collection is still largely unknown. In this study, a sample of 98 landraces sampled from 45 provinces of Turkey was assessed genotypically at 28 simple sequence repeat (SSR) loci and phenotypically for 19 morphological traits. The landraces varied significantly for all the latter traits. A total of 172 SSR alleles were detected, giving a mean of 6.21 alleles per locus. The genetic distance between pairs of landraces ranged from 0.18 to 0.63, with a mean of 0.35. Positive and negative correlation exists among different morphological and agronomic traits. Positive association among different traits showed that improvement of one character may simultaneously improve the other desired trait. Based on UPGMA dendrogram and Neighbor-Net (NNET) analyses from both morphological traits and SSR data, respectively, it is obvious that maize landraces from the same geographical region were often placed in different clusters, indicating that grouping based on genetic parameters was not closely related to the geographic origin. The wide diversity present in Turkish maize landraces could be used as genetic resource in designing maize breeding program for developing new cultivars adapted to different geographic and climatic conditions, and may also contribute to worldwide breeding programs. © 2011 Springer-Verlag.Firat University Scientific Research Projects Management Unit: ZF2004BAP17 TOVAG-104O186Acknowledgement We thank the Menemen gene bank (Aegean Agricultural Research Institute, Izmir, Turkey) for the kind provision of landrace seed stocks. The authors express their gratitude to TÜBİTAK (The Scientific and Technological Research Council of Turkey, TOVAG-104O186) and University of Cukurova, Scientific Research Projects Unit (ZF2004BAP17) for their financial support

iPBS-Retrotransposons-based genetic diversity and relationship among wild annual Cicer species

Lack of requisite genetic variation in cultivated species has necessitated systematic collection, documentation and evaluation of wild Cicer species for use in chickpea variety improvement programs. Cicer arietinum has very narrow genetic variation, and the use of a wild relative in chickpea breeding could provide a good opportunity for increasing the available genetic variation of cultivated chickpea. Genetic diversity and the relationship of 71 accessions, from the core area of chickpea origin and domestication (Southeastern Turkey), belonging to five wild annual species and one cultivated species (Cicer arietinum) were analysed using iPBS-retrotransposon and ISSR markers. A total of 136 scorable bands were detected using 10 ISSR primers among 71 accessions belonging to 6 species, out of which 135 were polymorphic (99.3 %), with an average of 13.5 polymorphic fragments per primer, whereas iPBS detected 130 bands with 100 % polymorphism with an average of 13.0 bands per primer. C. echinospermum and C. pinnatifidum were the most diverse among species, whereas C. arietinum exhibited lower polymorphism. The average polymorphism information contents (PIC) value for both marker systems was 0.91. The clustering of the accessions and species within groups was almost similar, when iPBS and ISSR NeighborNet (NNet) planar graphs were compared. Further detailed studies are indispensable in order to collect Cicer germplasm, especially C. reticulatum, from southeastern Turkey particularly, from Karacadag Mountain for preservation, management of this species, and to study their genetic diversity at molecular level. This study also demonstrates the utility and role of iPBS-retrotransposons, a dominant and ubiquitous part of eukaryotic genomes, for diversity studies in wild chickpea and in cultivated chickpea. © 2012 Society for Plant Biochemistry and Biotechnology

Biotechnological approaches for genetic improvement of fenugreek (Trigonella foenum-graceum L.)

Abstract Fenugreek (Trigonella foenum-graecum L.) is one of the important medicinal plants of ancient medicinal systems due to its high nutraceutical and pharmaceutical properties. Seeds and leaves of Fenugreek contain phytochemicals like diosgenin and trigonelline. It is a cultivated plant of the modern world for medicinal uses, an edible vegetable, and a forage plant. Advancement in industrial and biotechnological techniques for the isolation of phytochemicals increase the demand of Fenugreek, and its breeding programs are based on improving the secondary metabolites compared to other uses. Recent advancement in modern biotechnological approaches enables researchers to develop elite cultivars of desired traits in a short time. Application of modern techniques like artificial mutations under in vitro conditions, characterization using molecular markers, and development of successful plant tissue culture techniques, genetic transformation techniques, and functional genomics studies have significant potential to improve Fenugreek traits. The study highlights the application of biotechnological approaches used for the development of elite Fenugreek traits for the researchers for future breeding programs. Furthermore, the research gap and areas to improve research have been highlighted in this present study. © Springer Nature Singapore Pte Ltd. 2018