A Thesis in Petroleum Geosciences

>Magister Scientiae - MScThe North West Shelf of Australia is a prolific gas province. The Thebe Gas Field is situated within the northern central Exmouth Plateau in the Northern Carnarvon Basin. The Exmouth Plateau is a submerged continental block whose culmination lies at about 800m below sea level. The seismic data used for this study is the HEX07B survey which was conducted in 2007. The objective of this study was to interpret all available seismic data, of which six horizons were picked, generating two-way-time structure maps and an average velocity map, performing depth conversion and generating various depth maps. The horizons picked were the economic basement, Triassic Mungaroo, Murat Siltstone, Muderong Shale, Gearle Siltstone and the Sea Bed. The horizon of interest was the Triassic Mungaroo Formation and therefore it was the only horizon with an average velocity map. The seismic sections were used in conjunction with the structure maps generated to identify possible locations for appraisal wells to be drilled. Prospect X was identified on the basis of amplitude and structure present within the Triassic Mungaroo Formation. The final task was to calculate the volumes present and a Monte-Carlo Simulation was used for this. The results obtained showed that Prospect X has a good petroleum system in place. The Mungaroo Formation is identified as being the possible source and reservoir rock, the Muderong Shale is the seal, structural traps are provided by large fault block and faults provided the migration pathways from the source in to the reservoir. The volumes were calculated using three areas identified on the structure maps by three closing contours. These areas are the P90, P50, P10 and the volumes for the gas in place were as follows, P90 = 893 Bcf (0.9Tcf), P50 = 1128 Bcf (1.1 Tcf), P10 = 1367 Bcf (1.4Tcf). Using the various parameters the probability of success for Prospect X was calculated to be 20%

Therapeutic efficacy of favipiravir against Bourbon virus in mice

Bourbon virus (BRBV) is an emerging tick-borne RNA virus in the orthomyxoviridae family that was discovered in 2014. Although fatal human cases of BRBV have been described, little is known about its pathogenesis, and no antiviral therapies or vaccines exist. We obtained serum from a fatal case in 2017 and successfully recovered the second human infectious isolate of BRBV. Next-generation sequencing of the St. Louis isolate of BRBV (BRBV-STL) showed >99% nucleotide identity to the original reference isolate. Using BRBV-STL, we developed a small animal model to study BRBV-STL tropism in vivo and evaluated the prophylactic and therapeutic efficacy of the experimental antiviral drug favipiravir against BRBV-induced disease. Infection of Ifnar1-/- mice lacking the type I interferon receptor, but not congenic wild-type animals, resulted in uniformly fatal disease 6 to 10 days after infection. RNA in situ hybridization and viral yield assays demonstrated a broad tropism of BRBV-STL with highest levels detected in liver and spleen. In vitro replication and polymerase activity of BRBV-STL were inhibited by favipiravir. Moreover, administration of favipiravir as a prophylaxis or as post-exposure therapy three days after infection prevented BRBV-STL-induced mortality in immunocompromised Ifnar1-/- mice. These results suggest that favipiravir may be a candidate treatment for humans who become infected with BRBV

Estimating Increased Transient Water Storage With Increases in Beaver Dam Activity

Dam building by beaver (Castor spp.) slows water movement through montane valleys, increasing transient water storage and the diversity of residence times. In some cases, water storage created by beaver dam construction is correlated to changes in streamflow magnitude and timing. However, the total amount of additional surface and groundwater storage that beaver dams may create (and, thus, their maximum potential impact on streamflow) has not been contextualized in the water balance of larger river basins. We estimate the potential transient water storage increases that could be created at 5, 25, 50, and 100% of maximum modeled beaver dam capacity in the Bear River basin, USA, by adapting the height above nearest drainage (HAND) algorithm to spatially estimate surface water storage. Surface water storage estimates were combined with the MODFLOW groundwater model to estimate potential increases in groundwater storage throughout the basin. We tested four scenarios to estimate potential transient water storage increases resulting from the construction of 1179 to 34,897 beaver dams, and estimated surface water storage to range from 57.5 to 72.8 m3 per dam and groundwater storage to range from 182.2 to 313.3 m3 per dam. Overall, we estimate that beaver dam construction could increase transient water storage by up to 10.38 million m3 in the Bear River basin. We further contextualize beaver dam-related water storage increases with streamflow, reservoir, and snowpack volumes

Analysis of small-diameter wood supply in northern Arizona - Final report

Forest management to restore fire-adapted ponderosa pine ecosystems is a central priority of the Southwestern Region of the USDA Forest Service. Appropriately-scaled businesses are apt to play a key role in achieving this goal by harvesting, processing and selling wood products, thereby reducing treatment costs and providing economic opportunities. The manner in which treatments occur across northern Arizona, with its multiple jurisdictions and land management areas, is of vital concern to a diversity of stakeholder groups. To identify a level of forest thinning treatments and potential wood supply from restoration byproducts, a 20-member working group representing environmental non-governmental organizations (NGOs), private forest industries, local government, the Ecological Restoration Institute at Northern Arizona University (NAU), and state and federal land and resource management agencies was assembled. A series of seven workshops supported by Forest Ecosystem Restoration Analysis (ForestERA; NAU) staff were designed to consolidate geographic data and other spatial information and to synthesize potential treatment scenarios for a 2.4 million acre analysis area south of the Grand Canyon and across the Mogollon Plateau. A total of 94% of the analysis area is on National Forest lands. ForestERA developed up-to-date remote sensing-based forest structure data layers to inform the development of treatment scenarios, and to estimate wood volume in three tree diameter classes of 16" diameter at breast height (dbh, 4.5' above base). For the purposes of this report, the group selected a 16" dbh threshold due to its common use within the analysis landscape as a break point differentiating "small" and "large" diameter trees in the ponderosa pine forest type. The focus of this study was on small-diameter trees, although wood supply estimates include some trees >16" dbh where their removal was required to meet desired post-treatment conditions.4 There was no concurrence within the group that trees over 16" dbh should be cut and removed from areas outside community protection management areas (CPMAs)..

Controlling molten carbonate distribution in dual-phase molten salt-ceramic membranes to increase carbon dioxide permeation rates

Dual-phase molten salt-ceramic membranes show high permselectivity for CO2 when molten carbonate is supported in a porous oxygen-ion and/or electron conductor. In this arrangement, the support likely contributes to permeation. Thus, if one is to understand and ultimately design membranes, it is also important to perform experiments with an inert support where permeation relies upon the molten carbonate properties alone. Here, a nominally inert material (Al2O3) was used in order to restrict permeation to molten carbonate. Model Al2O3 dual-phase membranes were fabricated using laser drilling to provide an order of magnitude difference in molten salt-gas interfacial area between feed and permeate sides. Molten carbonate thickness in the model membranes was also varied, independent of the molten salt-gas interfacial area. For all thicknesses studied, CO2 permeation rates showed a significant temperature dependence from 500 to 750 °C, suggesting an activated process was rate-limiting, likely a permeate-side molten salt-gas interfacial process, i.e. desorption of CO2. We applied these findings in asymmetric hollow-fibre supports, a geometry with inherent modularity and scalability, by developing a new carbonate infiltration method to control molten carbonate distribution within the hollow fibre. Compared to a conventionally prepared dual-phase hollow-fibre membrane with an uncontrolled distribution of carbonates, permeation rates were increased by up to 4 times when the molten salt was confined to the packed-pore network, i.e. without infiltrating the hollow-fibre micro-channels. X-ray micro-CT investigations supported the idea that the resulting increase in interfacial area for desorption of CO2 was the key structural difference contributing to increased permeation rates. For CO2 separation, where large volumes of gas must be processed, such increases in permeation rates will reduce the demand for membrane materials, although one must note the higher permeation rates achievable with oxygen-ion and/or electron conducting supports

Enhanced drug delivery capabilities from stents coated with absorbable polymer and crystalline drug

Current drug eluting stent (DES) technology is not optimized with regard to the pharmacokinetics of drug delivery. A novel, absorbable-coating sirolimus-eluting stent (AC-SES) was evaluated for its capacity to deliver drug more evenly within the intimal area rather than concentrating drug around the stent struts and for its ability to match coating erosion with drug release. The coating consisted of absorbable poly-lactide-co-glycolic acid (PLGA) and crystalline sirolimus deposited by a dry-powder electrostatic process. The AC-SES demonstrated enhanced drug stability under simulated use conditions and consistent drug delivery balanced with coating erosion in a porcine coronary implant model. The initial drug burst was eliminated and drug release was sustained after implantation. The coating was absorbed within 90 days. Following implantation into porcine coronary arteries the AC-SES coating is distributed in the surrounding intimal tissue over the course of several weeks. Computational modeling of drug delivery characteristics demonstrates how distributed coating optimizes the load of drug immediately around each stent strut and extends drug delivery between stent struts. The result was a highly efficient arterial uptake of drug with superior performance to a clinical bare metal stent (BMS). Neointimal thickness (0.17 ± 0.07 mm vs. 0.28 ± 0.11 mm) and area percent stenosis (22 ± 9% vs. 35 ± 12%) were significantly reduced (p < 0.05) by the AC-SES compared to the BMS 30 days after stent implantation in an overlap configuration in porcine coronary arteries. Inflammation was significantly reduced in the AC-SES compared to the BMS at both 30 and 90 days after implantation. Biocompatible, rapidly absorbable stent coatings enable the matching of drug release with coating erosion and provide for the controlled migration of coating material into tissue to reduce vicissitudes in drug tissue levels, optimizing efficacy and reducing potential toxicity.Micell Technologies, Inc.National Institutes of Health (U.S.) (R01 GM49039

Understanding the thermo-mechanical behaviour of solid oxide fuel cell anodes using synchrotron X-ray diffraction

The formation of cermet materials via the addition of electrolyte ceramic to metal-based electrodes has become widely adopted in solid oxide fuel cell fabrication due to its benefits in maximizing triple-phase boundary densities, whilst mitigating bulk thermal expansion mismatch between electrode and electrolyte layers. This work improves thermo-mechanical understanding via examination of nickel-based anode materials using synchrotron X-ray diffraction; two cermet materials are studied: Ni-YSZ and Ni-GDC, with comparison to a ceramic-free Ni sample. Findings conclude that although the ceramic addition has minor effects on the cubic Ni structure within isothermal environments, stress induced by the different thermal properties within the cermet materials results in a shifted Ni thermal expansion peak on passing the Curie point. Moreover, extended cycling of the Ni-YSZ sample suggests that low-temperature operation (ca. 600 °C) may require several thermal cycles, or extended dwell times, to alleviate residual Ni stresses, this has potential implications for SOFC design and operation strategies

Characterising thermal runaway within lithium-ion cells by inducing and monitoring internal short circuits

Lithium-ion batteries are being used in increasingly demanding applications where safety and reliability are of utmost importance. Thermal runaway presents the greatest safety hazard, and needs to be fully understood in order to progress towards safer cell and battery designs. Here, we demonstrate the application of an internal short circuiting device for controlled, on-demand, initiation of thermal runaway. Through its use, the location and timing of thermal runaway initiation is pre-determined, allowing analysis of the nucleation and propagation of failure within 18 650 cells through the use of high-speed X-ray imaging at 2000 frames per second. The cause of unfavourable occurrences such as sidewall rupture, cell bursting, and cell-to-cell propagation within modules is elucidated, and steps towards improved safety of 18 650 cells and batteries are discussed

Associations between Varied Susceptibilities to PfATP4 Inhibitors and Genotypes in Ugandan Plasmodium falciparum Isolates.

Among novel compounds under recent investigation as potential new antimalarial drugs are three independently developed inhibitors of the Plasmodium falciparum P-type ATPase (PfATP4): KAE609 (cipargamin), PA92, and SJ733. We assessed ex vivo susceptibilities to these compounds of 374 fresh P. falciparum isolates collected in Tororo and Busia districts, Uganda, from 2016 to 2019. Median IC50s were 65 nM for SJ733, 9.1 nM for PA92, and 0.5 nM for KAE609. Sequencing of pfatp4 for 218 of these isolates demonstrated many nonsynonymous single nucleotide polymorphisms; the most frequent mutations were G1128R (69% of isolates mixed or mutant), Q1081K/R (68%), G223S (25%), N1045K (16%), and D1116G/N/Y (16%). The G223S mutation was associated with decreased susceptibility to SJ733, PA92, and KAE609. The D1116G/N/Y mutations were associated with decreased susceptibility to SJ733, and the presence of mutations at both codons 223 and 1116 was associated with decreased susceptibility to PA92 and SJ733. In all of these cases, absolute differences in susceptibilities of wild-type (WT) and mutant parasites were modest. Analysis of clones separated from mixed field isolates consistently identified mutant clones as less susceptible than WT. Analysis of isolates from other sites demonstrated the presence of the G223S and D1116G/N/Y mutations across Uganda. Our results indicate that malaria parasites circulating in Uganda have a number of polymorphisms in PfATP4 and that modestly decreased susceptibility to PfATP4 inhibitors is associated with some mutations now present in Ugandan parasites

Global maps of soil temperature

Research in global change ecology relies heavily on global climatic grids derived from estimates of air temperature in open areas at around 2 m above the ground. These climatic grids do not reflect conditions below vegetation canopies and near the ground surface, where critical ecosystem functions occur and most terrestrial species reside. Here, we provide global maps of soil temperature and bioclimatic variables at a 1-km(2) resolution for 0-5 and 5-15 cm soil depth. These maps were created by calculating the difference (i.e. offset) between in situ soil temperature measurements, based on time series from over 1200 1-km(2) pixels (summarized from 8519 unique temperature sensors) across all the world's major terrestrial biomes, and coarse-grained air temperature estimates from ERA5-Land (an atmospheric reanalysis by the European Centre for Medium-Range Weather Forecasts). We show that mean annual soil temperature differs markedly from the corresponding gridded air temperature, by up to 10 degrees C (mean = 3.0 +/- 2.1 degrees C), with substantial variation across biomes and seasons. Over the year, soils in cold and/or dry biomes are substantially warmer (+3.6 +/- 2.3 degrees C) than gridded air temperature, whereas soils in warm and humid environments are on average slightly cooler (-0.7 +/- 2.3 degrees C). The observed substantial and biome-specific offsets emphasize that the projected impacts of climate and climate change on near-surface biodiversity and ecosystem functioning are inaccurately assessed when air rather than soil temperature is used, especially in cold environments. The global soil-related bioclimatic variables provided here are an important step forward for any application in ecology and related disciplines. Nevertheless, we highlight the need to fill remaining geographic gaps by collecting more in situ measurements of microclimate conditions to further enhance the spatiotemporal resolution of global soil temperature products for ecological applications.Peer reviewe