Topological interactions between ring polymers: Implications for chromatin loops

Chromatin looping is a major epigenetic regulatory mechanism in higher eukaryotes. Besides its role in transcriptional regulation, chromatin loops have been proposed to play a pivotal role in the segregation of entire chromosomes. The detailed topological and entropic forces between loops still remain elusive. Here, we quantitatively determine the potential of mean force between the centers of mass of two ring polymers, i.e. loops. We find that the transition from a linear to a ring polymer induces a strong increase in the entropic repulsion between these two polymers. On top, topological interactions such as the non-catenation constraint further reduce the number of accessible conformations of close-by ring polymers by about 50%, resulting in an additional effective repulsion. Furthermore, the transition from linear to ring polymers displays changes in the conformational and structural properties of the system. In fact, ring polymers adopt a markedly more ordered and aligned state than linear ones. The forces and accompanying changes in shape and alignment between ring polymers suggest an important regulatory function of such a topology in biopolymers. We conjecture that dynamic loop formation in chromatin might act as a versatile control mechanism regulating and maintaining different local states of compaction and order.Comment: 12 pages, 11 figures. The article has been accepted by The Journal Of Chemical Physics. After it is published, it will be found at http://jcp.aip.or

Surveys of the earth's resources and environment by satellites

The potential and promise of observing the earth from the vantage point of space is discussed. The systematic surveying of processes and phenomena occurring on the surface of the earth by Landsat 1 and Nimbus 5 is considered to be useful in the following areas: assessment of water resources; mineral and petroleum exploration; land use planning; crop, forest, and rangeland inventory; assessment of flood, earthquake, and other environmental hazards; monitoring coastal processes; environmental effects of industrial effluents and of air pollution; mapping the distribution and types of ice covering the earth's polar caps and global soil moisture distributions

Chaotic Orbits in Thermal-Equilibrium Beams: Existence and Dynamical Implications

Phase mixing of chaotic orbits exponentially distributes these orbits through their accessible phase space. This phenomenon, commonly called ``chaotic mixing'', stands in marked contrast to phase mixing of regular orbits which proceeds as a power law in time. It is operationally irreversible; hence, its associated e-folding time scale sets a condition on any process envisioned for emittance compensation. A key question is whether beams can support chaotic orbits, and if so, under what conditions? We numerically investigate the parameter space of three-dimensional thermal-equilibrium beams with space charge, confined by linear external focusing forces, to determine whether the associated potentials support chaotic orbits. We find that a large subset of the parameter space does support chaos and, in turn, chaotic mixing. Details and implications are enumerated.Comment: 39 pages, including 14 figure

Development of advanced techniques for rotorcraft state estimation and parameter identification

An integrated methodology for rotorcraft system identification consists of rotorcraft mathematical modeling, three distinct data processing steps, and a technique for designing inputs to improve the identifiability of the data. These elements are as follows: (1) a Kalman filter smoother algorithm which estimates states and sensor errors from error corrupted data. Gust time histories and statistics may also be estimated; (2) a model structure estimation algorithm for isolating a model which adequately explains the data; (3) a maximum likelihood algorithm for estimating the parameters and estimates for the variance of these estimates; and (4) an input design algorithm, based on a maximum likelihood approach, which provides inputs to improve the accuracy of parameter estimates. Each step is discussed with examples to both flight and simulated data cases

Development of longitudinal handling qualities criteria for large advanced supersonic aircraft

Longitudinal handling qualities criteria in terms of airplane response characteristics were developed. The criteria cover high speed cruise maneuvering, landing approach, and stall recovery. Data substantiating the study results are reported

What does a binary black hole merger look like?

We present a method of calculating the strong-field gravitational lensing caused by many analytic and numerical spacetimes. We use this procedure to calculate the distortion caused by isolated black holes and by numerically evolved black hole binaries. We produce both demonstrative images illustrating details of the spatial distortion and realistic images of collections of stars taking both lensing amplification and redshift into account. On large scales the lensing from inspiraling binaries resembles that of single black holes, but on small scales the resulting images show complex and in some cases self-similar structure across different angular scales.Comment: 10 pages, 12 figures. Supplementary images and movies can be found at http://www.black-holes.org/the-science-numerical-relativity/numerical-relativity/gravitational-lensin