Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO).

Experimental data about gene functions curated from the primary literature have enormous value for research scientists in understanding biology. Using the Gene Ontology (GO), manual curation by experts has provided an important resource for studying gene function, especially within model organisms. Unprecedented expansion of the scientific literature and validation of the predicted proteins have increased both data value and the challenges of keeping pace. Capturing literature-based functional annotations is limited by the ability of biocurators to handle the massive and rapidly growing scientific literature. Within the community-oriented wiki framework for GO annotation called the Gene Ontology Normal Usage Tracking System (GONUTS), we describe an approach to expand biocuration through crowdsourcing with undergraduates. This multiplies the number of high-quality annotations in international databases, enriches our coverage of the literature on normal gene function, and pushes the field in new directions. From an intercollegiate competition judged by experienced biocurators, Community Assessment of Community Annotation with Ontologies (CACAO), we have contributed nearly 5,000 literature-based annotations. Many of those annotations are to organisms not currently well-represented within GO. Over a 10-year history, our community contributors have spurred changes to the ontology not traditionally covered by professional biocurators. The CACAO principle of relying on community members to participate in and shape the future of biocuration in GO is a powerful and scalable model used to promote the scientific enterprise. It also provides undergraduate students with a unique and enriching introduction to critical reading of primary literature and acquisition of marketable skills

Influenza A Viruses from Wild Birds in Guatemala Belong to the North American Lineage

The role wild bird species play in the transmission and ecology of avian influenza virus (AIV) is well established; however, there are significant gaps in our understanding of the worldwide distribution of these viruses, specifically about the prevalence and/or significance of AIV in Central and South America. As part of an assessment of the ecology of AIV in Guatemala, we conducted active surveillance in wild birds on the Pacific and Atlantic coasts. Cloacal and tracheal swab samples taken from resident and migratory wild birds were collected from February 2007 to January 2010.1913 samples were collected and virus was detected by real time RT-PCR (rRT-PCR) in 28 swab samples from ducks (Anas discors). Virus isolation was attempted for these positive samples, and 15 isolates were obtained from the migratory duck species Blue-winged teal. The subtypes identified included H7N9, H11N2, H3N8, H5N3, H8N4, and H5N4. Phylogenetic analysis of the viral sequences revealed that AIV isolates are highly similar to viruses from the North American lineage suggesting that bird migration dictates the ecology of these viruses in the Guatemalan bird population

Measurement of the energy and multiplicity distributions of neutrons from the photofission of U 235

For the first time, the complete neutron multiplicity distribution has been measured from the photofission of U235 induced by high-energy spallation γ rays arriving ahead of the neutron beam at the Los Alamos Neutron Science Center. The resulting average neutron multiplicity 3.80±0.08 (stat.) neutrons per photofission is in general agreement with previous measurements. In addition, unique measurements of the prompt fission energy spectrum of the neutrons from photofission and the angular correlation of two-neutron energies emitted in photofission also were made. The results are compared to calculations with the complete event fission model freya

Measurement of the energy and multiplicity distributions of neutrons from the photofission of U 235

For the first time, the complete neutron multiplicity distribution has been measured from the photofission of U235 induced by high-energy spallation γ rays arriving ahead of the neutron beam at the Los Alamos Neutron Science Center. The resulting average neutron multiplicity 3.80±0.08 (stat.) neutrons per photofission is in general agreement with previous measurements. In addition, unique measurements of the prompt fission energy spectrum of the neutrons from photofission and the angular correlation of two-neutron energies emitted in photofission also were made. The results are compared to calculations with the complete event fission model freya