30 research outputs found
ABCD Neurocognitive Prediction Challenge 2019: Predicting individual residual fluid intelligence scores from cortical grey matter morphology
We predicted residual fluid intelligence scores from T1-weighted MRI data
available as part of the ABCD NP Challenge 2019, using morphological similarity
of grey-matter regions across the cortex. Individual structural covariance
networks (SCN) were abstracted into graph-theory metrics averaged over nodes
across the brain and in data-driven communities/modules. Metrics included
degree, path length, clustering coefficient, centrality, rich club coefficient,
and small-worldness. These features derived from the training set were used to
build various regression models for predicting residual fluid intelligence
scores, with performance evaluated both using cross-validation within the
training set and using the held-out validation set. Our predictions on the test
set were generated with a support vector regression model trained on the
training set. We found minimal improvement over predicting a zero residual
fluid intelligence score across the sample population, implying that structural
covariance networks calculated from T1-weighted MR imaging data provide little
information about residual fluid intelligence.Comment: 8 pages plus references, 3 figures, 2 tables. Submission to the ABCD
Neurocognitive Prediction Challenge at MICCAI 201
ABCD Neurocognitive Prediction Challenge 2019: Predicting individual fluid intelligence scores from structural MRI using probabilistic segmentation and kernel ridge regression
We applied several regression and deep learning methods to predict fluid
intelligence scores from T1-weighted MRI scans as part of the ABCD
Neurocognitive Prediction Challenge (ABCD-NP-Challenge) 2019. We used voxel
intensities and probabilistic tissue-type labels derived from these as features
to train the models. The best predictive performance (lowest mean-squared
error) came from Kernel Ridge Regression (KRR; ), which produced a
mean-squared error of 69.7204 on the validation set and 92.1298 on the test
set. This placed our group in the fifth position on the validation leader board
and first place on the final (test) leader board.Comment: Winning entry in the ABCD Neurocognitive Prediction Challenge at
MICCAI 2019. 7 pages plus references, 3 figures, 1 tabl
Effects of a balanced translocation between chromosomes 1 and 11 disrupting the DISC1 locus on white matter integrity
Objective
Individuals carrying rare, but biologically informative genetic variants provide a unique opportunity to model major mental illness and inform understanding of disease mechanisms. The rarity of such variations means that their study involves small group numbers, however they are amongst the strongest known genetic risk factors for major mental illness and are likely to have large neural effects. DISC1 (Disrupted in Schizophrenia 1) is a gene containing one such risk variant, identified in a single Scottish family through its disruption by a balanced translocation of chromosomes 1 and 11; t(1;11) (q42.1;q14.3).
Method
Within the original pedigree, we examined the effects of the t(1;11) translocation on white matter integrity, measured by fractional anisotropy (FA). This included family members with (n = 7) and without (n = 13) the translocation, along with a clinical control sample of patients with psychosis (n = 34), and a group of healthy controls (n = 33).
Results
We report decreased white matter integrity in five clusters in the genu of the corpus callosum, the right inferior fronto-occipital fasciculus, acoustic radiation and fornix. Analysis of the mixed psychosis group also demonstrated decreased white matter integrity in the above regions. FA values within the corpus callosum correlated significantly with positive psychotic symptom severity.
Conclusions
We demonstrate that the t(1;11) translocation is associated with reduced white matter integrity in frontal commissural and association fibre tracts. These findings overlap with those shown in affected patients with psychosis and in DISC1 animal models and highlight the value of rare but biologically informative mutations in modeling psychosis
The Value of Routine Preoperative Medical Testing before Cataract Surgery
Background: Routine preoperative medical testing is commonly performed in patients scheduled to undergo cataract surgery, although the value of such testing is uncertain. We performed a study to determine whether routine testing helps reduce the incidence of intraoperative and postoperative medical complications. Methods: We randomly assigned 19,557 elective cataract operations in 18,189 patients at nine centers to be preceded or not preceded by a standard battery of medical tests (electrocardiography, complete blood count, and measurement of serum levels of electrolytes, urea nitrogen, creatinine, and glucose), in addition to a history taking and physical examination. Adverse medical events and interventions on the day of surgery and during the seven days after surgery were recorded. Results: Medical outcomes were assessed in 9408 patients who underwent 9626 cataract operations that were not preceded by routine testing and in 9411 patients who underwent 9624 operations that were preceded by routine testing. The most frequent medical events in both groups were treatment for hypertension and arrhythmia (principally bradycardia). The overall rate of complications (intraoperative and postoperative events combined) was the same in the two groups (31.3 events per 1000 operations). There were also no significant differences between the no-testing group and the testing group in the rates of intraoperative events (19.2 and 19.7, respectively, per 1000 operations) and postoperative events (12.6 and 12.1 per 1000 operations). Analyses stratified according to age, sex, race, physical status (according to the American Society of Anesthesiologists classification), and medical history revealed no benefit of routine testing. Conclusions: Routine medical testing before cataract surgery does not measurably increase the safety of the surgery
ABCD Neurocognitive Prediction Challenge 2019: Predicting individual residual fluid intelligence scores from cortical grey matter morphology
We predicted fluid intelligence from T1-weighted MRI data available as part of the ABCD NP Challenge 2019, using morphological similarity of grey-matter regions across the cortex. Individual structural covariance networks (SCN) were abstracted into graph-theory metrics averaged over nodes across the brain and in data-driven communities/modules. Metrics included degree, path length, clustering coefficient, centrality, rich club coefficient, and small-worldness. These features derived from the training set were used to build various regression models for predicting residual fluid intelligence scores, with performance evaluated both using cross-validation within the training set and using the held-out validation set. Our predictions on the test set were generated with a support vector regression model trained on the training set. We found minimal improvement over predicting a zero residual fluid intelligence score across the sample population, implying that structural covariance networks calculated from T1-weighted MR imaging data provide little information about residual fluid intelligence