Energy transfer in nonlinear network models of proteins

We investigate how nonlinearity and topological disorder affect the energy relaxation of local kicks in coarse-grained network models of proteins. We find that nonlinearity promotes long-range, coherent transfer of substantial energy to specific, functional sites, while depressing transfer to generic locations. Remarkably, transfer can be mediated by the self-localization of discrete breathers at distant locations from the kick, acting as efficient energy-accumulating centers.Comment: 4 pages, 3 figure

Let’s celebrate recovery. Inclusive Cities working together to support social cohesion

Recovery from illicit drug and alcohol use takes place over time and is characterised by a dynamic interaction between internal and external components. An integral part of all recovery journeys is effective community reintegration. After all, recovery is not mainly an issue of personal motivation rather it is about acceptance by family, by friends and by a range of organisations and professionals across the community. Therefore to support pathways to recovery, structural and contextual endeavours are needed to supplement individually-oriented interventions and programmes. One way to do this, is by introducing Inclusive Cities. An Inclusive City promotes participation, inclusion, full and equal citizenship to all her citizens, including those in recovery, based on the idea of community capital. The aim of building recovery capital at a community level through connections and 'linking social capital' to challenge stigmatisation and exclusion, is seen as central to this idea. Inclusive Cities is an initiative to support the creation of Recovery-Oriented Systems of Care at a city level, that starts with but extends beyond substance using populations. This paper describes (and gives examples of) how it is possible to use recovery as a starting point for generating social inclusion, challenging the marginalisation of other excluded populations as well by building community connections

Double Lobed Radio Quasars from the Sloan Digital Sky Survey

We have combined a sample of 44984 quasars, selected from the Sloan Digital Sky Survey (SDSS) Data Release 3, with the FIRST radio survey. Using a novel technique where the optical quasar position is matched to the complete radio environment within 450", we are able to characterize the radio morphological make-up of what is essentially an optically selected quasar sample, regardless of whether the quasar (nucleus) itself has been detected in the radio. About 10% of the quasar population have radio cores brighter than 0.75 mJy at 1.4 GHz, and 1.7% have double lobed FR2-like radio morphologies. About 75% of the FR2 sources have a radio core (> 0.75 mJy). A significant fraction (~40%) of the FR2 quasars are bent by more than 10 degrees, indicating either interactions of the radio plasma with the ICM or IGM. We found no evidence for correlations with redshift among our FR2 quasars: radio lobe flux densities and radio source diameters of the quasars have similar distributions at low (mean 0.77) and high (mean 2.09) redshifts. Using a smaller high reliability FR2 sample of 422 quasars and two comparison samples of radio-quiet and non-FR2 radio-loud quasars, matched in their redshift distributions, we constructed composite optical spectra from the SDSS spectroscopic data. Based on these spectra we can conclude that the FR2 quasars have stronger high-ionization emission lines compared to both the radio quiet and non-FR2 radio loud sources. This is consistent with the notion that the emission lines are brightened by ongoing shock ionization of ambient gas in the quasar host as the radio source expands.Comment: 20 pages, 10 figures - some of which have been reduced in quality / size. Accepted for publication in the Astronomical Journa

The Extended Line Region of 3C 299

We present results of HST observations of the radio galaxy 3C 299. The broad-band F702W (R) and F555W (V) images (WFPC2/PC) show an elliptical galaxy, with a comet-like structure extending to the NE in the radio jet direction. The [OIII]$\lambda$5007 emission line map, shows a bi-conical structure centered on the nucleus, that overlaps the structure found in the broad-band filters. The radio core coincides with the center of the bi-conical structure and the radio axes are aligned with the direction of the cones. These data show clear evidence of a strong interaction between the radio jet and the NE morphology of the galaxy. We show evidence that this NE region is an ENLR; the line-ratio diagnostics show that models involving gas shocked by the radio-jet plus ionization from a precursor HII region, produced itself by the ionizing photons of the postshocked gas on the preshocked gas provide a good match to the observations. We investigate the spatial behavior of the ionizing parameter $U$, by determining the [OIII]/[OII] line ratio which is sensitive to the change of the ionization parameter, and trace its behavior over the ENLR along the radio jet direction. We find that [OIII]/[OII] does not follow a simple dilution model, but rather that it is approximately constant over a large range of distance from the nucleus thus requiring a local source of ionization which seems to be compatible with the shock models driven by the radio jet.Comment: 17 pages, 9 Postscript figures, ApJ accepted, uses aaspp.st

Using Markov chain Monte Carlo methods for estimating parameters with gravitational radiation data

We present a Bayesian approach to the problem of determining parameters for coalescing binary systems observed with laser interferometric detectors. By applying a Markov Chain Monte Carlo (MCMC) algorithm, specifically the Gibbs sampler, we demonstrate the potential that MCMC techniques may hold for the computation of posterior distributions of parameters of the binary system that created the gravity radiation signal. We describe the use of the Gibbs sampler method, and present examples whereby signals are detected and analyzed from within noisy data.Comment: 21 pages, 10 figure

Circles in the Sky: Finding Topology with the Microwave Background Radiation

If the universe is finite and smaller than the distance to the surface of last scatter, then the signature of the topology of the universe is writ large on the microwave background sky. We show that the microwave background will be identified at the intersections of the surface of last scattering as seen by different ``copies'' of the observer. Since the surface of last scattering is a two-sphere, these intersections will be circles, regardless of the background geometry or topology. We therefore propose a statistic that is sensitive to all small, locally homogeneous topologies. Here, small means that the distance to the surface of last scatter is smaller than the ``topology scale'' of the universe.Comment: 14 pages, 10 figures, IOP format. This paper is a direct descendant of gr-qc/9602039. To appear in a special proceedings issue of Class. Quant. Grav. covering the Cleveland Topology & Cosmology Worksho

AGN-Induced Cavities in NGC 1399 and NGC 4649

We present an analysis of archival Chandra and VLA observations of the E0 galaxy NGC 1399 and the E2 galaxy NGC 4649 in which we investigate cavities in the surrounding X-ray emitting medium caused by the central AGN. We calculate the jet power required for the AGN to evacuate these cavities and find values of ~8x10^{41} erg/s and ~14x10^{41} erg/s for the lobes of NGC 1399 and ~7x10^{41} erg/s and ~6x10^{41} erg/s for those of NGC 4649. We also calculate the k/f values for each cavity, where k is the ratio of the total particle energy to that of electrons radiating in the range of 10 MHz to 10 GHz, and f is the volume filling factor of the plasma in the cavity. We find that the values of k/f for the lobes of NGC 1399 are ~93 and ~190, and those of the lobes of NGC 4649 are ~15000 and ~12000. We conclude that the assumed spectrum describes the electron distribution in the lobes of NGC 1399 reasonably well, and that there are few entrained particles. For NGC 4649, either there are many entrained particles or the model spectrum does not accurately describe the population of electrons.Comment: 8 pages, 2 figures, accepted for publication in MNRA

North Atlantic right whales (Eubalaena glacialis) ignore ships but respond to alerting stimuli

Author Posting. © Royal Society, 2004. This article is posted here by permission of Royal Society for personal use, not for redistribution. The definitive version was published in Proceedings of the Royal Society of London B 271 (2004): 227-231, doi:10.1098/rspb.2003.2570.North Atlantic right whales were extensively hunted during the whaling era and have not recovered. One of the primary factors inhibiting their recovery is anthropogenic mortality caused by ship strikes. To assess risk factors involved in ship strikes, we used a multi-sensor acoustic recording tag to measure the responses of whales to passing ships and experimentally tested their responses to controlled sound exposures, which included recordings of ship noise, the social sounds of conspecifics and a signal designed to alert the whales. The whales reacted strongly to the alert signal, they reacted mildly to the social sounds of conspecifics, but they showed no such responses to the sounds of approaching vessels as well as actual vessels. Whales responded to the alert by swimming strongly to the surface, a response likely to increase rather than decrease the risk of collision.Funding for this work was provided by the Fisheries Service of the US National Oceanic and Atmospheric Administration (contract no. NA87RJ0445), and was conducted under NOAA Fisheries permit to conduct scientific research no. 1014 issued to Dr Scott Kraus and Canadian Department of Fisheries and Oceans permits 2001-559 and 2002-568