Agro-morphological characterization of selected varieties of vegetable cowpea [Vigna unguiculata (L.) Walp.] in Burkina Faso

Vegetable Cowpea (Vigna unguiculata) is one of the neglected legumes in Burkina Faso, and as a result, its genetic diversity remains poorly known. The main aim of this study was to know its genetic variability through an agro-morphological characterization. Twenty vegetable cowpea varieties were evaluated at the Kamboinsé Environmental, Agricultural and Training Research Center following a three-replication Fischer block design under rainfed conditions. Fifteen quantitative and nine qualitative variables were collected and subjected to various statistical analyses. Analysis of variance was significant for the variables 50% flowering, vegetable cowpea date, number of pods obtained per plant, number of seeds per pod, fresh pod weight, fresh pod yield, pod length, plant height, seed length and chlorophyll content. Strong correlations were also reported between the various variables. The observed diversity is structured in three morphological groups viz., Group 1 consists of individuals with early flowering, high chlorophyll content and the number of pods obtained per plant. Group 2 brings together the varieties of average agronomic performance for pod length, the number of pods per plant, number of days at 95% maturity, fresh pod weight, yield of fresh pods and group 3 of varieties with long pods, early green date, high pod weight and good fresh pod yield. Among the tested varieties, the varieties IT83S-872 (30 pods), IT84S-2246 (27 pods), Baguette (25 pods), IT83S-818 (26 pods), and IT85F-2682 (24 pods) stood out for their high pod production. In addition, the varieties of vegetable cowpea baguette, baguette grimpant, Telma, and IT83S-911 showed the best performance in terms of early vegetable cowpea date stage, longest pods, highest pod weight and best yield of fresh pods. The high genetic variability level within the tested varieties could be exploited in future green cowpea breeding programmes

Beta-Lactamase-Producing Genes and Integrons in <em>Escherichia coli</em> from Diarrheal Children in Ouagadougou, Burkina Faso

This study aimed to determine the resistance of diarrheagenic Escherichia coli (DEC) strains to β-lactams antibiotics and to perform the molecular characterization of extended-spectrum β-lactamases (ESBLs) and integrons genes. It was carried out from August 2013 to October 2015 and involved 31 DEC strains isolated from diarrheal stools samples collected from children less than 5 years. The identification and characterization of DEC strains were done through the standard biochemical tests that were confirmed using API 20E and polymerase chain reaction (PCR). The antibiogram was realized by the disk diffusion method, then an amplification of the β-lactamase resistance genes and integrons by PCR was done. Out of the 419 E. coli, 31 isolates (7.4%) harbored the DEC virulence genes. From these DEC, 21 (67.7%) were ESBL-producing E. coli. Susceptibility to ESBL-producing E. coli showed that the majority of isolates were highly resistant to amoxicillin (77.4%), amoxicillin-clavulanic acid (77.4%), and piperacillin (64.5%). The following antibiotic resistance genes and integron were identified: blaTEM (6.5%), blaSHV (19.4%), blaOXA (38.7%), blaCTX-M (9.7%), Int1 (58.1%), and Int3 (19.4%). No class 2 integron (Int2) was characterized. Because of the high prevalence of multidrug-resistant ESBL organisms found, there is a need of stringent pediatric infection control measures

Expression Profiling of FSHD-1 and FSHD-2 Cells during Myogenic Differentiation Evidences Common and Distinctive Gene Dysregulation Patterns

BACKGROUND: Determine global gene dysregulation affecting 4q-linked (FSHD-1) and non 4q-linked (FSHD-2) cells during early stages of myogenic differentiation. This approach has been never applied to FSHD pathogenesis. METHODOLOGY/PRINCIPAL FINDINGS: By in vitro differentiation of FSHD-1 and FSHD-2 myoblasts and gene chip analysis we derived that gene expression profile is altered only in FSHD-1 myoblasts and FSHD-2 myotubes. The changes seen in FSHD-1 regarded a general defect in cell cycle progression, probably due to the upregulation of myogenic markers PAX3 and MYOD1, and a deficit of factors (SUV39H1 and HMGB2) involved in D4Z4 chromatin conformation. On the other hand, FSHD-2 mytubes were characterized by a general defect in RNA metabolism, protein synthesis and degradation and, to a lesser extent, in cell cycle. Common dysregulations regarded genes involved in response to oxidative stress and in sterol biosynthetic process. Interestingly, our results also suggest that miRNAs might be implied in both FSHD-1 and FSHD-2 gene dysregulation. Finally, in both cell differentiation systems, we did not observe a gradient of altered gene expression throughout the 4q35 chromosome. CONCLUSIONS/SIGNIFICANCE: FSHD-1 and FSHD-2 cells showed, in different steps of myogenic differentiation, a global deregulation of gene expression rather than an alteration of expression of 4q35 specific genes. In general, FSHD-1 and FSHD-2 global gene deregulation interested common and distinctive biological processes. In this regard, defects of cell cycle progression (FSHD-1 and to a lesser extent FSHD-2), protein synthesis and degradation (FSHD-2), response to oxidative stress (FSHD-1 and FSHD-2), and cholesterol homeostasis (FSHD-1 and FSHD-2) may in general impair a correct myogenesis. Taken together our results recapitulate previously reported defects of FSHD-1, and add new insights into the gene deregulation characterizing both FSHD-1 and FSHD-2, in which miRNAs may play a role

Selection and validation of marker set for selection of resistant varieties of cowpea to Cowpea Aphid-borne Mosaic Virus (CABMV) in Burkina Faso

Objective: This study aims to validate of marker set for selection of resistant varieties of Cowpea Aphid-borneMosaic Virus.Methodology and results: A molecular characterization of five genotypes using seventeen (17) SSR markers was carried out.Conclusion and application of results: This study make it possible to identify four (4) polymorphic microsatellite markers (VM30, VM33, VM68 and VM70), that is to say a rate of 23, 52% of polymorphism versus 76, 47% of monomorphism. Two of the polymorphic markers- VM68 and VM30 were submitted to the test of validation. At the end of this test, VM68 was codominant, because it makes it possible to distinguish the heterozygous individuals (F1, BC1 F1) from the homozygous individuals (F2) while the marker VM30 was dominating. The marker VM68 was validated and proposed in selection assisted by the markers of cowpea for resistance to CABMV.Keywords: cowpea, Cowpea Aphid-borne Mosaic Virus ((CABMV), Microsatellites, Validation, Burkina Fas