Putative ammonia-oxidizing Crenarchaeota in suboxic waters of the Black Sea : a basin-wide ecological study using 16S ribosomal and functional genes and membrane lipids

Author Posting. © Blackwell, 2007. This is the author's version of the work. It is posted here by permission of Blackwell for personal use, not for redistribution. The definitive version was published in Environmental Microbiology 9 (2007): 1001-1016, doi:10.1111/j.1462-2920.2006.01227.x.Within the upper 400 m at western, central, and eastern stations in the world’s largest stratified basin, the Black Sea, we studied the qualitative and quantitative distribution of putative nitrifying Archaea based on their genetic markers (16S rDNA, amoA encoding for the alfa-subunit of archaeal ammonia monooxygenase), and crenarchaeol, the specific glycerol diphytanyl glycerol tetraether (GDGT) of pelagic Crenarchaeota within the Group I.1a. Marine Crenarchaeota were the most abundant Archaea (up to 98% of the total archaeal 16S rDNA copies) in the suboxic layers with oxygen levels as low as 1 μM including layers where previously anammox bacteria were described (Kuypers et al., 2003). Different marine crenarchaeotal phylotypes (both 16S rDNA and amoA) were found at the upper part of the suboxic zone as compared to the base of the suboxic zone and the upper 15-30 m of the anoxic waters with prevailing sulfide concentrations of up to 30 μM. Crenarchaeol concentrations were higher in the sulfidic chemocline as compared to the suboxic zone. These results indicate an abundance of putative nitrifying Archaea at very low oxygen levels within the Black Sea and might form an important source of nitrite for the anammox reaction.This work was supported by a grant from the Netherlands Organization for Scientific Research (VENI Innovational Research Grant nr. 813.13.001 to MJLC), an U. S. National Science Foundation grant OCE0117824 to SGW and the Spinoza award to JSSD, which we greatly acknowledge

High-resolution metal gradients measured by in situ DGT/DET deployment in Black sea sediments using an autonomous benthic lander

DET (Diffusive equilibration in thin films) and DGT (diffusive gradients in thin films) have been deployed in situ using an autonomous benthic lander to measure concentrations and induced fluxes of Fe and Mn (DET/DGT) and trace metals (DGT) in pore waters at millimeter spatial resolutions. The newly developed deployment system is described, and based on these first results, its strengths and weaknesses are discussed. Deployments were made in the Western Black Sea in shelf sediments overlain by well‐oxygenated water at a water depth of 77 m. Maxima of the redox‐sensitive metals at 4 and 8 cm deep within the sediment indicated that two zones of reduction dominated the geochemistry. Sharp, but systematic, features were superimposed on this general picture and were well replicated in the profiles of Mn, Co, and Cd, but the sharp features in the Fe profile were offset from those of the others elements by several millimeters. Detection of this functional discrimination between Fe and Mn as regulators of trace metals would not have been possible using more conventional sampling procedures

Seasonal controls on anaerobic oxidation of methane in nearshore sediments of Aarhus bay (Denmark)

info:eu-repo/semantics/publishe