Comparison of artificial neural network analysis with other multimarker methods for detecting genetic association

<p>Abstract</p> <p>Background</p> <p>Debate remains as to the optimal method for utilising genotype data obtained from multiple markers in case-control association studies. I and colleagues have previously described a method of association analysis using artificial neural networks (ANNs), whose performance compared favourably to single-marker methods. Here, the perfomance of ANN analysis is compared with other multi-marker methods, comprising different haplotype-based analyses and locus-based analyses.</p> <p>Results</p> <p>Of several methods studied and applied to simulated SNP datasets, heterogeneity testing of estimated haplotype frequencies using asymptotic <it>p </it>values rather than permutation testing had the lowest power of the methods studied and ANN analysis had the highest power. The difference in power to detect association between these two methods was statistically significant (<it>p </it>= 0.001) but other comparisons between methods were not significant. The raw <it>t </it>statistic obtained from ANN analysis correlated highly with the empirical statistical significance obtained from permutation testing of the ANN results and with the <it>p </it>value obtained from the heterogeneity test.</p> <p>Conclusion</p> <p>Although ANN analysis was more powerful than the standard haplotype-based test it is unlikely to be taken up widely. The permutation testing necessary to obtain a valid <it>p </it>value makes it slow to perform and it is not underpinned by a theoretical model relating marker genotypes to disease phenotype. Nevertheless, the superior performance of this method does imply that the widely-used haplotype-based methods for detecting association with multiple markers are not optimal and efforts could be made to improve upon them. The fact that the <it>t </it>statistic obtained from ANN analysis is highly correlated with the statistical significance does suggest a possibility to use ANN analysis in situations where large numbers of markers have been genotyped, since the <it>t</it> value could be used as a proxy for the <it>p </it>value in preliminary analyses.</p

Characterization of Multiphase Polypyrrole/Vanadium Oxide Nano Composites for a.c. Conductivity and Dielectric Properties

Vanadium oxide: Phase-1 and Phase-2 nano powers were synthesized from vanadium pentoxide in the presence of glucose using hydrothermal technique. The polypyrrole/vanadium oxide (PV P-1 and PV P-2) nano composites were synthesized with 15, 30, 45 and 60 weight percents of vanadium oxide: Phase-1 and Phase-2 in pyrrole, by the chemical polymerization (oxidation) method. The SEM micrographs of vanadium oxide: Phase-1 and Phase-2 nano powders have shown&nbsp; mixture of nano belts &amp; rods and PV P-1 &amp; PV P-2 nano composites indicate that the composites have cluster formation with almost spherical nature particles and form elongated chains at some places. Conductivity versus frequency &nbsp;plots shown that exponential increase for conductivity. The value of s increases to 1.13x10-3 S/cm for 15 wt. % of VO2 P-1 in polypyrrole &amp; to 2.43x10-3 S/cm for 30 wt. % of VO2 P-2 in polypyrrole at 1 MHz

Fluctuation scaling in complex systems: Taylor's law and beyond

Complex systems consist of many interacting elements which participate in some dynamical process. The activity of various elements is often different and the fluctuation in the activity of an element grows monotonically with the average activity. This relationship is often of the form "$fluctuations \approx const.\times average^\alpha$", where the exponent $\alpha$ is predominantly in the range $[1/2, 1]$. This power law has been observed in a very wide range of disciplines, ranging from population dynamics through the Internet to the stock market and it is often treated under the names \emph{Taylor's law} or \emph{fluctuation scaling}. This review attempts to show how general the above scaling relationship is by surveying the literature, as well as by reporting some new empirical data and model calculations. We also show some basic principles that can underlie the generality of the phenomenon. This is followed by a mean-field framework based on sums of random variables. In this context the emergence of fluctuation scaling is equivalent to some corresponding limit theorems. In certain physical systems fluctuation scaling can be related to finite size scaling.Comment: 33 pages, 20 figures, 2 tables, submitted to Advances in Physic

Global wave loads on a damaged ship

A computational tool was applied based on a two dimensional linear method to predict the hydrodynamic loads for damaged ships. Experimental tests on a ship model have also been carried out to predict the hydrodynamic loads in various design conditions. The results of the theoretical method and experimental tests are compared to validate the theoretical method. The extreme wave induced loads have been calculated by short term prediction. For the loads in intact condition, the prediction with duration of 20 years at sea state 5 is used, while for loads in damaged conditions the prediction in 96 hours exposure time at sea 3 is used. The maximum values of the most probable extreme amplitudes of dynamic wave induced loads in damaged conditions are much less than those in intact condition because of the reduced time. An opening could change the distribution of not only stillwater bending moment but also wave-induced bending moment. It is observed that although some cross sections are not structurally damaged, the total loads acting on these cross sections after damage may be increased dramatically compared to the original design load in intact condition

Arteriovenous malformation of the spermatic cord as the cause of acute scrotal pain: a case report

Arteriovenous malformations of the lower urinary tract are uncommon lesions, usually presenting as scrotal masses. A case of recurrent acute scrotal pain mimicking testicular torsion that was attributed to the presence of an arteriovenous malformation of the spermatic cord is described. To our knowledge this is the first reported case of an arteriovenous malformation of the spermatic cord presenting with acute scrotal pain

Analysis of the Reaction Rate Coefficients for Slow Bimolecular Chemical Reactions

Simple bimolecular reactions $A_1+A_2\rightleftharpoons A_3+A_4$ are analyzed within the framework of the Boltzmann equation in the initial stage of a chemical reaction with the system far from chemical equilibrium. The Chapman-Enskog methodology is applied to determine the coefficients of the expansion of the distribution functions in terms of Sonine polynomials for peculiar molecular velocities. The results are applied to the reaction $H_2+Cl\rightleftharpoons HCl+H$, and the influence of the non-Maxwellian distribution and of the activation-energy dependent reactive cross sections upon the forward and reverse reaction rate coefficients are discussed.Comment: 11 pages, 5 figures, to appear in vol.42 of the Brazilian Journal of Physic

Discrete approaches to quantum gravity in four dimensions

The construction of a consistent theory of quantum gravity is a problem in theoretical physics that has so far defied all attempts at resolution. One ansatz to try to obtain a non-trivial quantum theory proceeds via a discretization of space-time and the Einstein action. I review here three major areas of research: gauge-theoretic approaches, both in a path-integral and a Hamiltonian formulation, quantum Regge calculus, and the method of dynamical triangulations, confining attention to work that is strictly four-dimensional, strictly discrete, and strictly quantum in nature.Comment: 33 pages, invited contribution to Living Reviews in Relativity; the author welcomes any comments and suggestion

Superconformal Block Quivers, Duality Trees and Diophantine Equations

We generalize previous results on N = 1, (3 + 1)-dimensional superconformal block quiver gauge theories. It is known that the necessary conditions for a theory to be superconformal, i.e. that the beta and gamma functions vanish in addition to anomaly cancellation, translate to a Diophantine equation in terms of the quiver data. We re-derive results for low block numbers revealing an new intriguing algebraic structure underlying a class of possible superconformal fixed points of such theories. After explicitly computing the five block case Diophantine equation, we use this structure to reorganize the result in a form that can be applied to arbitrary block numbers. We argue that these theories can be thought of as vectors in the root system of the corresponding quiver and superconformality conditions are shown to associate them to certain subsets of imaginary roots. These methods also allow for an interpretation of Seiberg duality as the action of the affine Weyl group on the root lattice

A comparison of methods for purification and concentration of norovirus GII-4 capsid virus-like particles

Noroviruses (NoVs) are one of the leading causes of acute gastroenteritis worldwide. NoV GII-4 VP1 protein was expressed in a recombinant baculovirus system using Sf9 insect cells. Several methods for purification and concentration of virus-like particles (VLPs) were evaluated. Electron microscopy (EM) and histo-blood group antigen (HBGA) binding assays showed that repeated sucrose gradient purification followed by ultrafiltration resulted in intact VLPs with excellent binding to H type 3 antigens. VLPs were stable for at least 12 months at 4°C, and up to 7 days at ambient temperature. These findings indicate that this method yielded stable and high-quality VLPs