The effect of gap size on growth and species composition of 15-year-old regrowth in mixed blackbutt forests

In north-eastern New South Wales (NSW) the Regional Forest Agreement process has transferred more than 400 000 ha of state forests to national park, and restricted silviculture to 'single tree selection' and a light form of 'Australian group selection'. While these silvicultural systems are theoretically well suited to ecologically sustainable forest management, there is concern that in their current form they are not achieving adequate regeneration or optimising the growth of that regeneration. This is of particular concern for mixed-species blackbutt forest, for which there is no quantitative research concerning the growth and composition of regeneration within group - selection gaps. We address this issue by: (1) quantifying the effect of gap size, and other gap characteristics including distance from gap edge, on the growth of regeneration; and (2) assessing the effect of gap size on the composition of regeneration. We use the answers to these questions to recommend a gap size for group selection silviculture in mixed-species blackbutt forests in north-eastern NSW. We measured attributes describing the growth and composition of regeneration in nine circular group-selection gaps in mixedspecies blackbutt forest near Coffs Harbour and Wauchope. These gaps contained 14.5-15.5-y-old regeneration and provided three replicates of small (0.27-0.3 ha), medium (0.45-0.67 ha) and large (0.93-0.97 ha) gaps. ANOVA testing indicated significantly (P < 0.05) lower height, diameter and volume growth of dominant blackbutt stems up to five metres from gap edge. Outside this zone growth remained fairly constant, indicating dominant blackbutt trees were susceptible to suppression only in close proximity to gap edges. Multiple regression analysis confirmed the relatively short distance from gap edges over which suppression occurred, with distance to closest gap edge explaining a small proportion of the variation in the models fitted for tree- and plot-level growth. The origin of blackbutt regeneration within gaps was a significant effect in tree-level growth models, with planted stems having increased diameter and volume growth compared with stems regenerated from natural seedfall. Gap size had no significant effect on the composition of regeneration. We conclude that for the range of gaps tested, 1 -ha gaps are optimal for growth because they minimise the proportion of gap within 5 m of the retained forest edge, without altering composition. Larger gaps have also been shown to have operational and economic benefits compared with smaller gaps

The conservation value of oil palm plantation estates, smallholdings and logged peat swamp forest for birds.

The expansion of industrial oil palm cultivation threatens tropical biodiversity globally, especially in developing countries. Driven by plans to generate economic revenue, large-scale plantations are emerging in Southeast Asia, Africa and Brazilian Amazon. However, the ecological impacts of the sector are poorly studied with respect to oil palm management system, and recommended conservation measures are based on limited data. We studied avifauna in oil palm landscapes in Peninsular Malaysia under different management systems (large plantation estates versus smallholdings) and age classes (uniform age versus mixed-age stands). We sampled 41 large plantation estates and 14 smallholdings, as well as 20 sites in an extensively logged peat swamp forest, the type of natural forest prior to conversion to oil palms. Compared with logged peat swamp forest, our results showed that forest conversion to oil palm cultivation may have eliminated 48–60% of bird species. We also found: (i) plantation estates and smallholdings supported similar bird assemblages but the latter supported significantly more species (P = 0.007); and (ii) despite reduced species richness in oil palm landscapes, we found high abundance of some individual bird species in specific types of stands including some forest, migratory, and wetland species. Conversion of natural forest to oil palm landscapes should not occur in the future through clearing of primary or secondary native forests. To complement conventional conservation approaches (e.g. the establishment of protected areas) in palm oil-producing countries, existing plantation estates and smallholdings should be managed in ways to promote improved conservation outcomes, although oil palm landscapes maintained a fraction of the original forest biodiversity. Managing habitat heterogeneity at both a local and a landscape-level is highly recommended in oil palm landscapes to maintain and/or enhance avian biodiversity

Does gender matter? A cross-national investigation of primary class-room discipline.

© 2018 Informa UK Limited, trading as Taylor & Francis GroupFewer than 15% of primary school teachers in both Germany and the UK are male. With the on-going international debate about educational performance highlighting the widening gender achievement gap between girl and boy pupils, the demand for more male teachers has become prevalent in educational discourse. Concerns have frequently been raised about the underachievement of boys, with claims that the lack of male ‘role models’ in schools has an adverse effect on boys’ academic motivation and engagement. Although previous research has examined ‘teaching’ as institutional talk, men’s linguistic behaviour in the classroom remains largely ignored, especially in regard to enacting discipline. Using empirical spoken data collected from four primary school classrooms in both the UK and in Germany, this paper examines the linguistic discipline strategies of eight male and eight female teachers using Interactional Sociolinguistics to address the question, does teacher gender matter?Peer reviewedFinal Accepted Versio

The influence of agricultural system, stand structural complexity and landscape context on foraging birds in oil palm landscapes

Functional diversity, an important element of avian biodiversity, can be examined by quantifying foraging guild composition. Understanding the ecological processes that underpin functional diversity of birds in oil palm Elaeis guineensis landscapes is important because different foraging guilds are likely to be influenced in different ways by land use practices. We surveyed birds at 55 sites within oil palm landscapes and at 20 sites within logged peat swamp forest, recording 208 species belonging to 19 foraging guilds. Oil palm landscapes supported a lower abundance of insectivorous, granivorous and omnivorous birds than did logged peat swamp forest despite the latter being severely degraded due to intensive timber extraction. However, abundances of other groups of foraging birds, such as raptors and wetland taxa, were higher in oil palm landscapes than logged peat swamp forest. Frugivorous species were more abundant in smallholdings than plantation estates, probably because of the presence of native trees. Foraging guild diversity was explained by stand-level attributes such as stand age, vegetation cover, epiphyte persistence and canopy cover. However, each foraging guild exhibited unique responses to different oil palm management regimes and stand-level attributes. Only arboreal omnivores and terrestrial frugivores were affected by the proximity of nearby natural forest. This diversity of responses implies that the occurrence of particular avian foraging guilds may not be a suitable ecological indicator of best-practice palm oil production. Our study also suggests that multiple conservation measures will be needed in oil palm landscapes irrespective of management regimes, including: (1) the maintenance of ground layer vegetation cover; (2) the pruning of oil palm canopy to permit light penetration to the ground layer; (3) re-vegetation of parts of oil palm landscapes with native trees; and (4) retention of natural and/or secondary forest patches within the boundaries of plantations

Association of DNA Polymerase (pol ) with Ku and Ligase IV: Role for pol in End-Joining Double-Strand Break Repair

Mammalian DNA polymerase μ (pol μ) is related to terminal deoxynucleotidyl transferase, but its biological role is not yet clear. We show here that after exposure of cells to ionizing radiation (IR), levels of pol μ protein increase. pol μ also forms discrete nuclear foci after IR, and these foci are largely coincident with IR-induced foci of γH2AX, a previously characterized marker of sites of DNA double-strand breaks. pol μ is thus part of the cellular response to DNA double-strand breaks. pol μ also associates in cell extracts with the nonhomologous end-joining repair factor Ku and requires both Ku and another end-joining factor, XRCC4-ligase IV, to form a stable complex on DNA in vitro. pol μ in turn facilitates both stable recruitment of XRCC4-ligase IV to Ku-bound DNA and ligase IV-dependent end joining. In contrast, the related mammalian DNA polymerase β does not form a complex with Ku and XRCC4-ligase IV and is less effective than pol μ in facilitating joining mediated by these factors. Our data thus support an important role for pol μ in the end-joining pathway for repair of double-strand breaks

The Major Roles of DNA Polymerases Epsilon and Delta at the Eukaryotic Replication Fork Are Evolutionarily Conserved

Coordinated replication of eukaryotic genomes is intrinsically asymmetric, with continuous leading strand synthesis preceding discontinuous lagging strand synthesis. Here we provide two types of evidence indicating that, in fission yeast, these two biosynthetic tasks are performed by two different replicases. First, in Schizosaccharomyces pombe strains encoding a polδ-L591M mutator allele, base substitutions in reporter genes placed in opposite orientations relative to a well-characterized replication origin are strand-specific and distributed in patterns implying that Polδ is primarily involved in lagging strand replication. Second, in strains encoding a polε-M630F allele and lacking the ability to repair rNMPs in DNA due to a defect in RNase H2, rNMPs are selectively observed in nascent leading strand DNA. The latter observation demonstrates that abundant rNMP incorporation during replication can be tolerated and that they are normally removed in an RNase H2-dependent manner. This provides strong physical evidence that Polε is the primary leading strand replicase. Collectively, these data and earlier results in budding yeast indicate that the major roles of Polδ and Polε at the eukaryotic replication fork are evolutionarily conserved

Low-fidelity DNA synthesis by the L979F mutator derivative of Saccharomyces cerevisiae DNA polymerase ζ

To probe Pol ζ functions in vivo via its error signature, here we report the properties of Saccharomyces cerevisiae Pol ζ in which phenyalanine was substituted for the conserved Leu-979 in the catalytic (Rev3) subunit. We show that purified L979F Pol ζ is 30% as active as wild-type Pol ζ when replicating undamaged DNA. L979F Pol ζ shares with wild-type Pol ζ the ability to perform moderately processive DNA synthesis. When copying undamaged DNA, L979F Pol ζ is error-prone compared to wild-type Pol ζ, providing a biochemical rationale for the observed mutator phenotype of rev3-L979F yeast strains. Errors generated by L979F Pol ζ in vitro include single-base insertions, deletions and substitutions, with the highest error rates involving stable misincorporation of dAMP and dGMP. L979F Pol ζ also generates multiple errors in close proximity to each other. The frequency of these events far exceeds that expected for independent single changes, indicating that the first error increases the probability of additional errors within 10 nucleotides. Thus L979F Pol ζ, and perhaps wild-type Pol ζ, which also generates clustered mutations at a lower but significant rate, performs short patches of processive, error-prone DNA synthesis. This may explain the origin of some multiple clustered mutations observed in vivo

Infected Cell Killing by HIV-1 Protease Promotes NF-κB Dependent HIV-1 Replication

Acute HIV-1 infection of CD4 T cells often results in apoptotic death of infected cells, yet it is unclear what evolutionary advantage this offers to HIV-1. Given the independent observations that acute T cell HIV-1 infection results in (1) NF-κB activation, (2) caspase 8 dependent apoptosis, and that (3) caspase 8 directly activates NF-κB, we questioned whether these three events might be interrelated. We first show that HIV-1 infected T cell apoptosis, NF-κB activation, and caspase 8 cleavage by HIV-1 protease are coincident. Next we show that HIV-1 protease not only cleaves procaspase 8, producing Casp8p41, but also independently stimulates NF-κB activity. Finally, we demonstrate that the HIV protease cleavage of caspase 8 is necessary for optimal NF-κB activation and that the HIV-1 protease specific cleavage fragment Casp8p41 is sufficient to stimulate HIV-1 replication through NF-κB dependent HIV-LTR activation both in vitro as well as in cells from HIV infected donors. Consequently, the molecular events which promote death of HIV-1 infected T cells function dually to promote HIV-1 replication, thereby favoring the propagation and survival of HIV-1

The fundamental constants and their variation: observational status and theoretical motivations

This article describes the various experimental bounds on the variation of the fundamental constants of nature. After a discussion on the role of fundamental constants, of their definition and link with metrology, the various constraints on the variation of the fine structure constant, the gravitational, weak and strong interactions couplings and the electron to proton mass ratio are reviewed. This review aims (1) to provide the basics of each measurement, (2) to show as clearly as possible why it constrains a given constant and (3) to point out the underlying hypotheses. Such an investigation is of importance to compare the different results, particularly in view of understanding the recent claims of the detections of a variation of the fine structure constant and of the electron to proton mass ratio in quasar absorption spectra. The theoretical models leading to the prediction of such variation are also reviewed, including Kaluza-Klein theories, string theories and other alternative theories and cosmological implications of these results are discussed. The links with the tests of general relativity are emphasized.Comment: 56 pages, l7 figures, submitted to Rev. Mod. Phy